View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_low_225 (Length: 228)
Name: NF1199_low_225
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_225 |
 | |
|
| [»] scaffold0146 (1 HSPs) |
| | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0026 (1 HSPs) |
| | |
|
| [»] scaffold0321 (1 HSPs) |
| | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
|
| [»] scaffold0269 (1 HSPs) |
| | |
|
| [»] scaffold0359 (1 HSPs) |
| | |
|
| [»] scaffold0062 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 18280861 - 18280671
Alignment:
| Q |
1 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18280861 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
18280762 |
T |
|
| Q |
101 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattcctatataatttctgacctttatca |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| |
|
|
| T |
18280761 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattcctatataatttttgtccttcatca |
18280671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 9398742 - 9398553
Alignment:
| Q |
1 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9398742 |
tctttttggttctggattgaaccaagtttatagaaacttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
9398643 |
T |
|
| Q |
101 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattcctatataatttctgacctttatca |
191 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
9398642 |
aagtgaatgtaacgcattctttcaccatttctttccccaaatccctctttttattttactttta-tcctatacgatttctgaccttcatca |
9398553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 42872574 - 42872424
Alignment:
| Q |
1 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42872574 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttatcattccttcttggattgg |
42872475 |
T |
|
| Q |
101 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttt |
151 |
Q |
| |
|
||||||||||||||| |||||| |||||| ||||||||||||||||||||| |
|
|
| T |
42872474 |
aagtgaatgtgacgcgttcttttaccattcctttccccaaatccatctttt |
42872424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 21377794 - 21377952
Alignment:
| Q |
3 |
tttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaa |
102 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
21377794 |
tttttggttctggattga-ccaagtttatcgaatcttatcaatggctttcttaccattgtggcgattcttcatggcttaacattccttcttggattggaa |
21377892 |
T |
|
| Q |
103 |
gtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttactttt |
163 |
Q |
| |
|
|||| | |||||| |||||| |||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
21377893 |
gtgagtatgacgccttcttt-accattcctttccccaaatccatatttttattttactttt |
21377952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 54800135 - 54799984
Alignment:
| Q |
3 |
tttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaa |
102 |
Q |
| |
|
|||||||||||| | |||||||| |||||||||||||||||||| ||| ||| ||||||| |||| | ||| ||| ||||||||||||||||||| || |
|
|
| T |
54800135 |
tttttggttctgaaatgaaccaaatttatcgaatcttatcaatgaattctttatcattgtgacgatacttcatagctcagcattccttcttggattgaaa |
54800036 |
T |
|
| Q |
103 |
gtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattt |
156 |
Q |
| |
|
||| |||| ||| |||||| |||||| ||||||||||||||||| |||||||| |
|
|
| T |
54800035 |
gtg--tgtggcgcgttcttttaccattcctttccccaaatccatcattttattt |
54799984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 12077982 - 12077895
Alignment:
| Q |
79 |
ttagcattccttcttggattggaagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattc |
167 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| |||||| |||||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
12077982 |
ttagcattccttcttggattagaagtgattgtgacgccttcttt-accattccttttcccaattccatctttttattttacttttattc |
12077895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 17202170 - 17202296
Alignment:
| Q |
29 |
tatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaagtgaatgtgacgcattctttcaccat |
128 |
Q |
| |
|
|||| ||||||||||||| |||||||| ||||||| ||||||||| ||||||||||| || | ||||| |||||||||||||| ||| || ||||| |
|
|
| T |
17202170 |
tatcaaatcttatcaatgacttccttatcattgtgacgattcctcttggcttagcattttttataggattagaagtgaatgtgacatcttcctt-accat |
17202268 |
T |
|
| Q |
129 |
ttctttccccaaatccatctttttattt |
156 |
Q |
| |
|
|||||| |||| ||||| ||||||||| |
|
|
| T |
17202269 |
ctctttctccaattccatatttttattt |
17202296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 27711 - 27890
Alignment:
| Q |
1 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27711 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattga |
27810 |
T |
|
| Q |
101 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattcctatataatttct |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27811 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattcctatataatttct |
27890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 22299999 - 22299812
Alignment:
| Q |
4 |
ttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaag |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22299999 |
ttttggttttggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaag |
22299900 |
T |
|
| Q |
104 |
tgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattcctatataatttctgacctttatca |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
22299899 |
tgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattcctatataatttctgtccttcatca |
22299812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 45709285 - 45709471
Alignment:
| Q |
9 |
gttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaagtgaat |
108 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| ||| ||||| |||||||||||| || ||||| |||||||| ||||||||||||||| | |
|
|
| T |
45709285 |
gttctagattgaaccaaatttatcgaatcttatcaatgactttgttacccttgtggcgattcttcgtagcttaacattccttattggattggaagtgagt |
45709384 |
T |
|
| Q |
109 |
gtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattcctatataatttctgacctttatcagaag |
195 |
Q |
| |
|
||||||| |||||| || ||| |||||| ||| ||||| ||||||||||| |||||||| ||| | |||||| ||||||||||||| |
|
|
| T |
45709385 |
gtgacgcgttcttttactattcctttcctcaattccatatttttattttatttttattcttatttgatttctttcctttatcagaag |
45709471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 17330594 - 17330748
Alignment:
| Q |
2 |
ctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgga |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||| | |||||| |||| | | ||||||| |||||| ||||||||||| |
|
|
| T |
17330594 |
ctttttggttctggattgaaccaagtttatcgaatcttattaatgacttccttatctttgtggatattctttatggcttagtattcctgcttggattgga |
17330693 |
T |
|
| Q |
102 |
agtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttatttt |
157 |
Q |
| |
|
||||| |||||| | |||||| |||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
17330694 |
agtgagtgtgacaccttcttt-accattcctttccctaaatccacctttttatttt |
17330748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 1003392 - 1003446
Alignment:
| Q |
124 |
accatttctttccccaaatccatctttttattttacttttattcctatataattt |
178 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
1003392 |
accattcctttccccaaatccatctttttatttcacttttattcctatatgattt |
1003446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 15724976 - 15724929
Alignment:
| Q |
26 |
gtttatcgaatcttatcaatggcttccttaccattgtggcgattcctc |
73 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15724976 |
gtttattgaatcttatcaatgacttccttaccattgtggcgattcctc |
15724929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 34806493 - 34806529
Alignment:
| Q |
33 |
gaatcttatcaatggcttccttaccattgtggcgatt |
69 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
34806493 |
gaatcatatcaatggcttccttaccattgtgccgatt |
34806529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 41000203 - 41000039
Alignment:
| Q |
1 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41000203 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
41000104 |
T |
|
| Q |
101 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttat |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41000103 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttat |
41000039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 191
Target Start/End: Original strand, 7843269 - 7843456
Alignment:
| Q |
3 |
tttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaa |
102 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7843269 |
ttttttgttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattctggcgattcctcaaggcttagcattccttcttgaattggaa |
7843368 |
T |
|
| Q |
103 |
gtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattcctatataatttctgacctttatca |
191 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
7843369 |
gtgaatgtgacgcattcttt-accatttctttccccaattccatctttttattttacttttattcctatacaatttctgatcttcatca |
7843456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 35154 - 34990
Alignment:
| Q |
1 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35154 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
35055 |
T |
|
| Q |
101 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttat |
165 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35054 |
aagtgaatgtgacgcattctatcaccatttctttccccaaatccatctttttattttacttttat |
34990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 16022548 - 16022368
Alignment:
| Q |
1 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16022548 |
tctttatggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggtgattcctcaaggcttagcattccttcttggattgg |
16022449 |
T |
|
| Q |
101 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattcctatataatttctg |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
16022448 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattcatatacaaattctg |
16022368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 2309405 - 2309243
Alignment:
| Q |
1 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2309405 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
2309306 |
T |
|
| Q |
101 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttactttt |
163 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2309305 |
aagtgaatgtgacgcattctatcatcatttctttccccaaatccatcttttaattttactttt |
2309243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 5553884 - 5553733
Alignment:
| Q |
29 |
tatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaagtgaatgtgacgcattctttcaccat |
128 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||| |||||| ||||| |
|
|
| T |
5553884 |
tatcgaatcttatcaatgtcttccttaccattgtggcgattcctcctggcttagcattccatcttggattagaagtgagtgtgacgcgttcttttaccat |
5553785 |
T |
|
| Q |
129 |
ttctttccccaaatccatctttttattttacttttattcctatataatttctg |
181 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5553784 |
tcctttccccaaatccatc-ttttattttacttttattcctatataatttctg |
5553733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 2684138 - 2684220
Alignment:
| Q |
26 |
gtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaagtgaat |
108 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||||| ||||||| ||||||||| |
|
|
| T |
2684138 |
gtttatcgaatcttatcaatgacttccttaccattgtgacgattcctcatggcttaacattcctttttggattagaagtgaat |
2684220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 172
Target Start/End: Original strand, 32571090 - 32571224
Alignment:
| Q |
38 |
ttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaagtgaatgtgacgcattctttcaccatttctttccc |
137 |
Q |
| |
|
||||||| ||||||||| ||||| || ||||| || |||| | |||||||||||| ||| ||||||| |||||| |||||||| ||| ||||||| || |
|
|
| T |
32571090 |
ttatcaacggcttccttgccattatgacgattgctattggctaatcattccttcttgaattagaagtgagtgtgacacattcttt-accctttcttttcc |
32571188 |
T |
|
| Q |
138 |
caaatccatctttttattttac-ttttattcctata |
172 |
Q |
| |
|
||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
32571189 |
caattccatctttttatttaccattttattcctata |
32571224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 38937028 - 38936866
Alignment:
| Q |
1 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38937028 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
38936929 |
T |
|
| Q |
101 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttactttt |
163 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936928 |
aagtgaatgtgacgcattctatcaccatttctttccccaaatccatctttttattttactttt |
38936866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 191
Target Start/End: Original strand, 87141 - 87328
Alignment:
| Q |
3 |
tttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaa |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87141 |
ttttcggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaa |
87240 |
T |
|
| Q |
103 |
gtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattcctatataatttctgacctttatca |
191 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||| |||| |||| |
|
|
| T |
87241 |
gggaatgtgacgcattcttt-accatttctttccccaatttcatctttttattttacttttattcctatacaatttctgtccttcatca |
87328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 8366686 - 8366848
Alignment:
| Q |
1 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
8366686 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcaattcctcaaagcttagcattccttcttggattgg |
8366785 |
T |
|
| Q |
101 |
aagtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttactttt |
163 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
8366786 |
aagtgaatgtgacgcattctatcaccatttcttttcccaaatccatttttttattttactttt |
8366848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 17277799 - 17277722
Alignment:
| Q |
1 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggc |
78 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17277799 |
tctttttggttctagattgaaccaagtttatcgaatcttatcaatggattccttaccattgtggcgattcctcaaggc |
17277722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 6473436 - 6473558
Alignment:
| Q |
1 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6473436 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattgg |
6473535 |
T |
|
| Q |
101 |
aagtgaatgtgacgcattctttc |
123 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
6473536 |
aagtgaatgtgacgcattctttc |
6473558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 18801430 - 18801263
Alignment:
| Q |
3 |
tttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaa |
102 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |
|
|
| T |
18801430 |
tttttggttttggattgaaccatgtttatcgaatcttatcaataacttccttaccattgtggcgattcttcatagcttagcattccttcttggattgaaa |
18801331 |
T |
|
| Q |
103 |
gtgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttacttttattccta |
170 |
Q |
| |
|
|||| |||||||| |||||| |||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18801330 |
gtgagtgtgacgcgttcttttaccattcctttccccaaaaccatctttttattttacttttattccta |
18801263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31390494 - 31390564
Alignment:
| Q |
1 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcc |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31390494 |
tctttttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcc |
31390564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 24326177 - 24326113
Alignment:
| Q |
6 |
ttggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattc |
70 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||| || |||||||||||| |||||| |
|
|
| T |
24326177 |
ttggttttggattgaaccaagtttatcgaattttatcaatgattttcttaccattgtgacgattc |
24326113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 5822 - 5944
Alignment:
| Q |
29 |
tatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaagtgaatgtgacgcattctttcaccat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||| |||||||| |||||| ||||| |
|
|
| T |
5822 |
tatcgaatcttatcaatggcttccttaccattgttgcgattcctcctggcttagcattcctttttggattagaagtgagtgtgacgcgttcttttaccat |
5921 |
T |
|
| Q |
129 |
ttctttccccaaatccatctttt |
151 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
5922 |
tcctttccccaaatccatctttt |
5944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 12980 - 12847
Alignment:
| Q |
29 |
tatcgaatcttatcaatggcttccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaagtgaatgtgacgcattctttcaccat |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||| |||||| ||||| |
|
|
| T |
12980 |
tatcgaatcttatcaatggcttccttaccattgtggcgattcctcctgacttagcattccttcttgaattggaagtgagtgtgacgtcttcttt-accat |
12882 |
T |
|
| Q |
129 |
ttctttccccaaatccatctttttattttactttt |
163 |
Q |
| |
|
| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
12881 |
tccttaccccaaatccatatttttattttactttt |
12847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0269 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0269
Description:
Target: scaffold0269; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 1508 - 1442
Alignment:
| Q |
7 |
tggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctc |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1508 |
tggttctggattgaaccaagtttatcgaatcttatcaatggcttccttaccattgtggcgattcctc |
1442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 15485278 - 15485173
Alignment:
| Q |
50 |
tccttaccattgtggcgattcctcaaggcttagcattccttcttggattggaagtgaatgtgacgcattctttcaccatttc-tttccccaaatccatct |
148 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
15485278 |
tccttaccattgtcgcgatttctcttagcttagcatt---tcttggattggaagtgaatgtgacgcattcttttaccatttcttttttccaaatccatct |
15485182 |
T |
|
| Q |
149 |
ttttatttt |
157 |
Q |
| |
|
||||||||| |
|
|
| T |
15485181 |
ttttatttt |
15485173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0359 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0359
Description:
Target: scaffold0359; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 8360 - 8301
Alignment:
| Q |
104 |
tgaatgtgacgcattctttcaccatttctttccccaaatccatctttttattttactttt |
163 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8360 |
tgaatgtgacgcattctatcaccatttctttccctaaatccatctttttattttactttt |
8301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 73529 - 73482
Alignment:
| Q |
26 |
gtttatcgaatcttatcaatggcttccttaccattgtggcgattcctc |
73 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
73529 |
gtttattgaatcttatcaatgacttccttaccattgtggcgattcctc |
73482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 43578 - 43608
Alignment:
| Q |
192 |
gaagacataacagaaacttgtgcgatggtgg |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43578 |
gaagacataacagaaacttgtgcgatggtgg |
43608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University