View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_226 (Length: 224)

Name: NF1199_low_226
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_226
NF1199_low_226
[»] chr3 (11 HSPs)
chr3 (1-224)||(38000449-38000672)
chr3 (22-86)||(14195242-14195306)
chr3 (33-86)||(2736699-2736752)
chr3 (33-86)||(40925745-40925798)
chr3 (40-81)||(43946346-43946387)
chr3 (17-65)||(54788994-54789042)
chr3 (16-86)||(21496796-21496865)
chr3 (33-83)||(22126445-22126495)
chr3 (31-86)||(19971956-19972011)
chr3 (31-75)||(8425256-8425300)
chr3 (16-72)||(55121318-55121374)
[»] chr4 (10 HSPs)
chr4 (16-86)||(43335335-43335405)
chr4 (16-86)||(16401161-16401231)
chr4 (17-71)||(24535130-24535184)
chr4 (16-86)||(44504855-44504925)
chr4 (22-83)||(7114360-7114421)
chr4 (33-86)||(37465935-37465988)
chr4 (33-86)||(14797280-14797333)
chr4 (16-86)||(53816156-53816226)
chr4 (22-59)||(27599661-27599698)
chr4 (31-75)||(55405142-55405186)
[»] chr5 (12 HSPs)
chr5 (17-86)||(35634993-35635062)
chr5 (16-86)||(19663049-19663119)
chr5 (16-86)||(19676863-19676934)
chr5 (16-86)||(37259260-37259330)
chr5 (16-66)||(38352107-38352157)
chr5 (33-86)||(22270285-22270338)
chr5 (41-86)||(38395078-38395123)
chr5 (16-86)||(19647103-19647174)
chr5 (16-86)||(29086268-29086340)
chr5 (22-68)||(11776070-11776116)
chr5 (32-72)||(21744499-21744539)
chr5 (32-72)||(42740290-42740330)
[»] chr2 (6 HSPs)
chr2 (16-86)||(5885354-5885424)
chr2 (17-79)||(41318225-41318287)
chr2 (31-75)||(5088794-5088838)
chr2 (26-70)||(17738017-17738061)
chr2 (144-186)||(41317590-41317632)
chr2 (144-180)||(5885716-5885752)
[»] scaffold0024 (1 HSPs)
scaffold0024 (17-86)||(11813-11882)
[»] chr1 (10 HSPs)
chr1 (22-81)||(181570-181629)
chr1 (16-86)||(47074416-47074485)
chr1 (16-85)||(27133131-27133200)
chr1 (16-86)||(4692744-4692813)
chr1 (22-84)||(8920034-8920096)
chr1 (22-72)||(51064705-51064755)
chr1 (17-86)||(3288100-3288169)
chr1 (22-81)||(16763907-16763966)
chr1 (47-81)||(10801035-10801069)
chr1 (41-86)||(12307125-12307170)
[»] chr6 (7 HSPs)
chr6 (16-86)||(10894981-10895051)
chr6 (22-81)||(27156437-27156496)
chr6 (17-81)||(6059790-6059854)
chr6 (16-81)||(26092691-26092756)
chr6 (16-86)||(25987974-25988044)
chr6 (31-75)||(97365-97409)
chr6 (16-86)||(17750049-17750119)
[»] chr7 (8 HSPs)
chr7 (22-86)||(18295183-18295247)
chr7 (16-85)||(8363838-8363908)
chr7 (33-86)||(31422068-31422121)
chr7 (22-86)||(3091421-3091487)
chr7 (16-74)||(17264510-17264568)
chr7 (17-86)||(19341074-19341144)
chr7 (33-86)||(18887257-18887310)
chr7 (31-75)||(37126744-37126788)
[»] chr8 (7 HSPs)
chr8 (33-86)||(33363790-33363843)
chr8 (22-84)||(20099072-20099133)
chr8 (33-86)||(42809728-42809781)
chr8 (22-86)||(35538734-35538798)
chr8 (16-75)||(18427755-18427814)
chr8 (54-86)||(32382305-32382337)
chr8 (54-86)||(32436260-32436292)
[»] scaffold0005 (1 HSPs)
scaffold0005 (33-86)||(42398-42451)
[»] scaffold0285 (1 HSPs)
scaffold0285 (22-81)||(7753-7812)
[»] scaffold0054 (1 HSPs)
scaffold0054 (22-81)||(3543-3602)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38000449 - 38000672
Alignment:
Q  1 tggggtggccgccatcaacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcgaatttaccacccctg 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38000449 tggggtggccgccatcaacacatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcgaatttgccacccctg 38000548  T
Q  101 cagcacatttgaattctgtcaaatttcaaggtatnnnnnnnnnttaagatgggttggccgtggctcccccttgccacccctggttcggtcagtgaacaaa 200  Q
    || |||||||||||||||||||||||||||||||         |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38000549 caacacatttgaattctgtcaaatttcaaggtataaaaaaaaattaagatggggtggccgtggctcccccttgccacccctggttcggtcagtgaacaaa 38000648  T
Q  201 atcttgtatcttaatgtcaaatga 224  Q
    ||||||||||||||||||||||||    
T  38000649 atcttgtatcttaatgtcaaatga 38000672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 14195242 - 14195306
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||||||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||    
T  14195242 atttaagttgtaataaactaaaaatcaatcatttaaaatttaaactacataatatataaagtcga 14195306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 2736752 - 2736699
Alignment:
Q  33 aatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||| |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  2736752 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcga 2736699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 40925798 - 40925745
Alignment:
Q  33 aatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||| |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  40925798 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcga 40925745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 43946387 - 43946346
Alignment:
Q  40 caaaaatcgatcattcaaaatttaaactacataatatataaa 81  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43946387 caaaaatcgatcattcaaaatttaaactacataatatataaa 43946346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 54789042 - 54788994
Alignment:
Q  17 aacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaa 65  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  54789042 aacatatttaagttgtaataaaccaaaaatcgatcattcaaaatttaaa 54788994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 21496865 - 21496796
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||| |||| ||||||| ||||    
T  21496865 caacacatttaagttttaataaaccaaaaattgatcattcaaaatttaaacta-ataacatataaaatcga 21496796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 22126445 - 22126495
Alignment:
Q  33 aatataccaaaaatcgatcattcaaaatttaaactacataatatataaagt 83  Q
    |||| |||||||| | |||||||||||||||||||||||||||||||||||    
T  22126445 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagt 22126495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 19971956 - 19972011
Alignment:
Q  31 gtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||||| |||||||||||||||||||||||||||| | ||||||| ||||| ||||    
T  19971956 gtaataaaccaaaaatcgatcattcaaaatttaaagtgcataatacataaaatcga 19972011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 8425256 - 8425300
Alignment:
Q  31 gtaatataccaaaaatcgatcattcaaaatttaaactacataata 75  Q
    |||||| |||||||||||||||||||||||||||| | |||||||    
T  8425256 gtaataaaccaaaaatcgatcattcaaaatttaaagtgcataata 8425300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 55121374 - 55121318
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacata 72  Q
    ||||| |||||| |||||||| | ||||||||||||||||||||| ||||| |||||    
T  55121374 caacacatttaacttgtaataaatcaaaaatcgatcattcaaaatctaaacaacata 55121318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 43335335 - 43335405
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43335335 caacacatttaagttgtaatataccaaaaaccgatcattcaaaatttaaactacataatatataaagtcga 43335405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 16401231 - 16401161
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| ||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||| ||||    
T  16401231 caacacatttaagttgtaataaaccgaaaatcgaacattcaaaatttaaactacataataaataaattcga 16401161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 24535130 - 24535184
Alignment:
Q  17 aacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacat 71  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24535130 aacacatttaagttgtaatacaccaaaaatcgatcattcaaaatttaaactacat 24535184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 44504925 - 44504855
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| |||||||| |||||| | |||||||| |||||| |||||||||||||||||||||||||||||||    
T  44504925 caacacatttaagtcgtaataaatcaaaaatcaatcatttaaaatttaaactacataatatataaagtcga 44504855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 7114421 - 7114360
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagt 83  Q
    ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||    
T  7114421 atttaagttgtaataaactaaaaatcgatcattcaaaatttaaattacataatataaaaagt 7114360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 37465935 - 37465988
Alignment:
Q  33 aatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37465935 aataaaccaaaaatcaatcattcaaaatttaaactacataatatataaagtcga 37465988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 14797280 - 14797333
Alignment:
Q  33 aatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||| |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  14797280 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcga 14797333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 53816156 - 53816226
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| |||||| || ||||| |||||||| |||||||||||||  | || || |||||||||||||||||    
T  53816156 caacatatttaaattttaataaaccaaaaagcgatcattcaaaaagtcaattatataatatataaagtcga 53816226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 27599698 - 27599661
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaa 59  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  27599698 atttaagttgtaataaaccaataatcgatcattcaaaa 27599661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 55405186 - 55405142
Alignment:
Q  31 gtaatataccaaaaatcgatcattcaaaatttaaactacataata 75  Q
    |||||| ||||||||| |||||||||||||||||| | |||||||    
T  55405186 gtaataaaccaaaaattgatcattcaaaatttaaagtgcataata 55405142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 35634993 - 35635062
Alignment:
Q  17 aacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35634993 aacacatttaagttgtaataaaccaaaaaacgatcattcaaaatttaaactacataatatataaagtcga 35635062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 19663049 - 19663119
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||    
T  19663049 caacacatttaagttgtaataaatcaaaaatcgattattcaaaatttaaactacataatatataaagtcga 19663119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 19676863 - 19676934
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaa-tttaaactacataatatataaagtcga 86  Q
    ||||| ||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||    
T  19676863 caacacatttaagttgtaataaaccaaaaatcggtcaatcaaaaatttaaactacataatatataaagtcga 19676934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 37259330 - 37259260
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||| ||||| ||||||||||    
T  37259330 caacatatttaagttgtaataaaccaaaagtcgatcattcaaaatgtaaactacgtaatacataaagtcga 37259260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 38352157 - 38352107
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaac 66  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  38352157 caacacatttaagttgtaataaaccaaaaatcgatcattcaaaatttaaac 38352107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 22270285 - 22270338
Alignment:
Q  33 aatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||| |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  22270285 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcga 22270338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 38395078 - 38395123
Alignment:
Q  41 aaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  38395078 aaaaaacgatcattcaaaatttaaactacataatatataaagtcga 38395123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 19647174 - 19647103
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaa-tcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| ||||||||||||||| || ||||| ||| ||||||||||||||||||||||||| |||||| ||||    
T  19647174 caacacatttaagttgtaataaacaaaaaaatcgttcattcaaaatttaaactacataatgtataaaatcga 19647103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 29086340 - 29086268
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaact--acataatatataaagtcga 86  Q
    ||||| |||||||| |||||| ||||||||  |||||||||||||||| |||  |||||||||||||||||||    
T  29086340 caacatatttaagtcgtaataaaccaaaaactgatcattcaaaatttatactacacataatatataaagtcga 29086268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 11776116 - 11776070
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaacta 68  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||    
T  11776116 atttaatttgtaataaatcaaaaatcgatcattcaaaatttaaacta 11776070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 21744499 - 21744539
Alignment:
Q  32 taatataccaaaaatcgatcattcaaaatttaaactacata 72  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  21744499 taataaaccaaaaatcgattattcaaaatttaaactacata 21744539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 42740290 - 42740330
Alignment:
Q  32 taatataccaaaaatcgatcattcaaaatttaaactacata 72  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  42740290 taataaacaaaaaatcgatcattcaaaatttaaactacata 42740330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 5885354 - 5885424
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  5885354 caacacatttaagttgtaataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcga 5885424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 41318287 - 41318225
Alignment:
Q  17 aacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatata 79  Q
    |||| ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  41318287 aacacatttaagttgtaataaacaaaaaatcgatcatttaaaatttaaactacataatatata 41318225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 5088838 - 5088794
Alignment:
Q  31 gtaatataccaaaaatcgatcattcaaaatttaaactacataata 75  Q
    |||||| |||||||||||||||||||||||||||| | |||||||    
T  5088838 gtaataaaccaaaaatcgatcattcaaaatttaaagtgcataata 5088794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 17738017 - 17738061
Alignment:
Q  26 aagttgtaatataccaaaaatcgatcattcaaaatttaaactaca 70  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||    
T  17738017 aagttgtaataaaccaaaaaacgatcattcaaaatttaaaataca 17738061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 41317632 - 41317590
Alignment:
Q  144 ttaagatgggttggccgtggctcccccttgccacccctggttc 186  Q
    |||||||||| ||||| |||||||||| |||||||||||||||    
T  41317632 ttaagatggggtggccatggctcccccatgccacccctggttc 41317590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 5885716 - 5885752
Alignment:
Q  144 ttaagatgggttggccgtggctcccccttgccacccc 180  Q
    |||||||||| |||||||||||||| |||||||||||    
T  5885716 ttaagatggggtggccgtggctcccacttgccacccc 5885752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 11813 - 11882
Alignment:
Q  17 aacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  11813 aacacatttaagttgtaataaaccaaaaaacgatcattcaaaatttaaactacataatatataaaatcga 11882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 181629 - 181570
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaa 81  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  181629 atttaagtcgtaataaaccaaaaatcgatcattcaaaatttaaactacataatatataaa 181570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 47074416 - 47074485
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47074416 caacacatttaa-ttgtaataaaccaaaaattgatcattcaaaatttaaactacataatatataaagtcga 47074485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 27133200 - 27133131
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcg 85  Q
    ||||| |||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||||||||    
T  27133200 caacatatttaagtcgtaataaatcaaaaaccgatcattcaaaatttaaactacataatatataaagtcg 27133131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 4692813 - 4692744
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| ||||||||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||    
T  4692813 caacacatttaagttgtaataaatcaaaaatcgatcattc-aaatgtaaactacataatatataaagtcga 4692744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 8920096 - 8920034
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtc 84  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||| ||||||||    
T  8920096 atttaagttgtaataaaccgaaagtcgatcattcaaaatttaaattacataatacataaagtc 8920034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 51064705 - 51064755
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacata 72  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  51064705 atttaagttgtaataaatcaaaaatcgatcattcaaaatttaaactacata 51064755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 3288100 - 3288169
Alignment:
Q  17 aacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||| ||||||||||||||| |||||||||  |||||| ||||||||||| |||| ||||||||||||||    
T  3288100 aacacatttaagttgtaataaaccaaaaattaatcatttaaaatttaaaccacatgatatataaagtcga 3288169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 16763907 - 16763966
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaa 81  Q
    |||||||| |||||| ||||||||   ||| |||||||||||||||||||||||||||||    
T  16763907 atttaagtcgtaataaaccaaaaacgaatcgttcaaaatttaaactacataatatataaa 16763966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 10801035 - 10801069
Alignment:
Q  47 cgatcattcaaaatttaaactacataatatataaa 81  Q
    ||||| |||||||||||||||||||||||||||||    
T  10801035 cgatcgttcaaaatttaaactacataatatataaa 10801069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 12307125 - 12307170
Alignment:
Q  41 aaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||||||||||||||||||||||| | ||||||| ||||| ||||    
T  12307125 aaaaatcgatcattcaaaatttaaagtgcataatacataaaatcga 12307170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 10894981 - 10895051
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| |||||| | |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10894981 caacacatttaattcgtaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcga 10895051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 27156437 - 27156496
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaa 81  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||    
T  27156437 atttaagttgtaataagccaaaaattgatcattcaaaatttaaactacataatatataaa 27156496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 6059790 - 6059854
Alignment:
Q  17 aacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaa 81  Q
    |||| ||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||||    
T  6059790 aacatatttaagttataataaaccaaaaatcgatcatttaaaatttaaactatataatatataaa 6059854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 26092756 - 26092691
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaa 81  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||||||||||||| |||||    
T  26092756 caacatatttatgttgtaataaatcaaaaatcgataattcaaaatttaaactacataatacataaa 26092691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 25988044 - 25987974
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| ||||||||||||||| |  |||||||||| ||||||||||||||||||| |||| ||||| ||||    
T  25988044 caacatatttaagttgtaataaattaaaaatcgataattcaaaatttaaactacacaatacataaaatcga 25987974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 97409 - 97365
Alignment:
Q  31 gtaatataccaaaaatcgatcattcaaaatttaaactacataata 75  Q
    |||||| |||||||||||||||||||||||||||| | |||||||    
T  97409 gtaataaaccaaaaatcgatcattcaaaatttaaagtgcataata 97365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 17750119 - 17750049
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||| |||||||||  |||| |  |||||| ||||||||||||||| || ||||||||||||||| ||||    
T  17750119 caacatatttaagttaaaataaattaaaaattgatcattcaaaatttgaagtacataatatataaattcga 17750049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 18295247 - 18295183
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  18295247 atttaagtagtaataaataaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 18295183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 8363908 - 8363838
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatat-ataaagtcg 85  Q
    ||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8363908 caacacatttaagtcgttataaaccaaaaatcgatcattcaaaatttaaactacataatataataaagtcg 8363838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 31422121 - 31422068
Alignment:
Q  33 aatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31422121 aataaaccaaaaatcaatcattcaaaatttaaactacataatatataaagtcga 31422068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 3091487 - 3091421
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaactac--ataatatataaagtcga 86  Q
    ||||||||||||||| || |||| ||||||||||||||||||||||||  |||||| ||||||||||    
T  3091487 atttaagttgtaataaacaaaaattcgatcattcaaaatttaaactacatataatacataaagtcga 3091421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 17264510 - 17264568
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataat 74  Q
    ||||| |||||||| |||||| | |||||| ||||||||||||||||||||||||||||    
T  17264510 caacacatttaagtcgtaataaatcaaaaaccgatcattcaaaatttaaactacataat 17264568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 19341144 - 19341074
Alignment:
Q  17 aacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataat-atataaagtcga 86  Q
    |||| ||||||||||||||| | |||||||||||||||| ||||||||| || ||||| ||||||||||||    
T  19341144 aacacatttaagttgtaataaatcaaaaatcgatcattccaaatttaaattatataataatataaagtcga 19341074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 18887310 - 18887257
Alignment:
Q  33 aatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||| |||||||| || ||||| |||||||||||||||||||||||||||||||    
T  18887310 aataaaccaaaaaccgttcatttaaaatttaaactacataatatataaagtcga 18887257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 37126788 - 37126744
Alignment:
Q  31 gtaatataccaaaaatcgatcattcaaaatttaaactacataata 75  Q
    |||||| |||||||||||||||||||||||||||| | |||||||    
T  37126788 gtaataaaccaaaaatcgatcattcaaaatttaaagtgcataata 37126744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 33363843 - 33363790
Alignment:
Q  33 aatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33363843 aataaaccaaaaatcaatcattcaaaatttaaactacataatatataaagtcga 33363790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 20099133 - 20099072
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtc 84  Q
    ||||||||||||||  | |||||||||||||||||||| ||||||||||||||||||||||||    
T  20099133 atttaagttgtaatgaatcaaaaatcgatcattcaaaa-ttaaactacataatatataaagtc 20099072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 42809781 - 42809728
Alignment:
Q  33 aatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||| |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  42809781 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcga 42809728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 35538734 - 35538798
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    ||||||||||||||| |||| |||| ||  || |||| |||||||||||||||| ||||||||||    
T  35538734 atttaagttgtaataaaccataaattgaatatgcaaagtttaaactacataatacataaagtcga 35538798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 18427814 - 18427755
Alignment:
Q  16 caacagatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataata 75  Q
    ||||| |||||| |||| ||| |||||||||| ||  |||||||||||||||||||||||    
T  18427814 caacacatttaacttgttataaaccaaaaatcaattgttcaaaatttaaactacataata 18427755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 32382337 - 32382305
Alignment:
Q  54 tcaaaatttaaactacataatatataaagtcga 86  Q
    |||||||||||||||||||||||||||| ||||    
T  32382337 tcaaaatttaaactacataatatataaattcga 32382305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 32436292 - 32436260
Alignment:
Q  54 tcaaaatttaaactacataatatataaagtcga 86  Q
    |||||||||||||||||||||||||||| ||||    
T  32436292 tcaaaatttaaactacataatatataaattcga 32436260  T

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Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 42451 - 42398
Alignment:
Q  33 aatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 86  Q
    |||| |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  42451 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcga 42398  T

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Target: scaffold0285 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 7753 - 7812
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaa 81  Q
    |||||||| |||||| ||||||||   ||| |||||||||||||||||||||||||||||    
T  7753 atttaagtcgtaataaaccaaaaacgaatcgttcaaaatttaaactacataatatataaa 7812  T

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Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 3602 - 3543
Alignment:
Q  22 atttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaa 81  Q
    |||||||| |||||| ||||||||   ||| |||||||||||||||||||||||||||||    
T  3602 atttaagtcgtaataaaccaaaaacgaatcgttcaaaatttaaactacataatatataaa 3543  T

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