View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_227 (Length: 223)

Name: NF1199_low_227
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_227
NF1199_low_227
[»] chr8 (3 HSPs)
chr8 (1-194)||(15348775-15348968)
chr8 (99-192)||(12195317-12195410)
chr8 (99-192)||(12439745-12439838)
[»] chr4 (10 HSPs)
chr4 (4-124)||(48147756-48147876)
chr4 (83-192)||(48170533-48170642)
chr4 (100-192)||(48891430-48891522)
chr4 (72-137)||(48898694-48898759)
chr4 (4-132)||(48705390-48705518)
chr4 (106-193)||(48852690-48852777)
chr4 (76-124)||(48735421-48735469)
chr4 (91-153)||(7877738-7877800)
chr4 (1-43)||(48870455-48870497)
chr4 (1-43)||(48886141-48886183)
[»] chr3 (2 HSPs)
chr3 (2-140)||(47451930-47452068)
chr3 (83-135)||(11015544-11015596)
[»] chr5 (1 HSPs)
chr5 (73-137)||(29696197-29696261)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 15348775 - 15348968
Alignment:
Q  1 ctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348775 ctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaat 15348874  T
Q  101 taaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataatgt 194  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348875 taaaagatgattacttggtggttttaatgtcctatgatcccgccttagataatatttattcgtgtttggagtttttctcgttgagagataatgt 15348968  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 12195317 - 12195410
Alignment:
Q  99 attaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataat 192  Q
    ||||| ||||||||||||||| |||||| ||||||||||||| |||||||  || | ||  |||| ||| || |||||||| ||||||||||||    
T  12195317 attaagagatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataat 12195410  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 12439745 - 12439838
Alignment:
Q  99 attaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataat 192  Q
    ||||| ||||||||||||||| |||||| ||||||||||||| |||||||  || | ||  |||| ||| || |||||||| ||||||||||||    
T  12439745 attaagagatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataat 12439838  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 48147876 - 48147756
Alignment:
Q  4 tggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaa 103  Q
    ||||||||||||||||||  | |||  ||| |||||||||| ||| ||||||  || ||||| || | ||||| |||| |||| ||||||||||| ||||    
T  48147876 tggaatccatccaccggagctaacaagaaaatacctttgtctccttttggttccaatttagatgcagcatattactatggttttgggtatgaccagttaa 48147777  T
Q  104 aagatgattacttggtggttt 124  Q
     ||||||||||||||||||||    
T  48147776 cagatgattacttggtggttt 48147756  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 48170642 - 48170533
Alignment:
Q  83 gtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgtt 182  Q
    |||| |||||||| || |||| |||||||||||| ||||||| | |||||| |||||| ||||||| | ||  ||||||| ||||||| |||||||| ||    
T  48170642 gttttgggtatgatcagttaagagatgattacttagtggtttcagtgtcctgtgatccaaccttagttcattgttattcgcgtttggaatttttctcatt 48170543  T
Q  183 gagagataat 192  Q
     |||||||||    
T  48170542 aagagataat 48170533  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 48891430 - 48891522
Alignment:
Q  100 ttaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataat 192  Q
    |||| ||||||||| |||||||||| | ||||||||||| | |||||||||  || | || || |||||||||||||||| ||||||||||||    
T  48891430 ttaagagatgattagttggtggtttcagtgtcctatgatacaaccttagatggtaatcatccgcgtttggagtttttctcattgagagataat 48891522  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 48898694 - 48898759
Alignment:
Q  72 atatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatga 137  Q
    |||||||||| |||| |||||||| || |||| |||||||||||| ||||||||| ||||||||||    
T  48898694 atatttctatggttttgggtatgatcagttaacagatgattacttagtggttttattgtcctatga 48898759  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 48705518 - 48705390
Alignment:
Q  4 tggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaa 103  Q
    ||||||||||| || |||||||||| | || |||||||||| ||| ||||||   | ||||| || ||||||||| || |||| || ||||| || | ||    
T  48705518 tggaatccatctactggatttcacaaacaaatacctttgtcaccttttggttccgatttagatgcagaatatttccatggttttggatatgatcagtcaa 48705419  T
Q  104 aagatgattacttggtggttttaatgtcc 132  Q
     ||||||||||||||| |||| |||||||    
T  48705418 cagatgattacttggttgtttcaatgtcc 48705390  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 48852690 - 48852777
Alignment:
Q  106 gatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataatg 193  Q
    |||||||||||||| |||||||||||||||||| | ||||||| |||| |||  ||   ||| ||||||||||| ||||||| |||||    
T  48852690 gatgattacttggtagttttaatgtcctatgatacaaccttagctaatgtttcatcacatttagagtttttctcattgagagctaatg 48852777  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 48735469 - 48735421
Alignment:
Q  76 ttctatagtttcgggtatgaccaattaaaagatgattacttggtggttt 124  Q
    |||||| |||| ||||||||||| |||| ||||||||||||||||||||    
T  48735469 ttctatggttttgggtatgaccatttaacagatgattacttggtggttt 48735421  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 7877738 - 7877800
Alignment:
Q  91 tatgaccaattaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataat 153  Q
    |||||||||| || |||||||||||||||||||| | |||||||| |||| ||| ||| ||||    
T  7877738 tatgaccaatcaagagatgattacttggtggtttcattgtcctataatccaaccatagttaat 7877800  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 48870455 - 48870497
Alignment:
Q  1 ctatggaatccatccaccggatttcacagaaaagtacctttgt 43  Q
    |||||||||||||||||||||||||||| | || |||||||||    
T  48870455 ctatggaatccatccaccggatttcacaaacaaatacctttgt 48870497  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 48886141 - 48886183
Alignment:
Q  1 ctatggaatccatccaccggatttcacagaaaagtacctttgt 43  Q
    |||||||||||||||||||||||||||| | || |||||||||    
T  48886141 ctatggaatccatccaccggatttcacaaacaaatacctttgt 48886183  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 47452068 - 47451930
Alignment:
Q  2 tatggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaatt 101  Q
    |||||||||||||||| ||| |||||| | || |||||||| | ||| ||||||  ||  |||| ||  | ||||| ||| | || ||||||||| | ||    
T  47452068 tatggaatccatccactggagttcacaaacaaatacctttgcctccttttggttccaatgtagatgcaaattatttttattggtttgggtatgacgagtt 47451969  T
Q  102 aaaagatgattacttggtggttttaatgtcctatgatcc 140  Q
    || |||||||||||| ||||||||||||||| |||||||    
T  47451968 aacagatgattacttagtggttttaatgtccgatgatcc 47451930  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 11015596 - 11015544
Alignment:
Q  83 gtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctat 135  Q
    |||| ||||||||||| |||| |||||||||||||||||| | | ||||||||    
T  11015596 gttttgggtatgaccatttaagagatgattacttggtggtatcagtgtcctat 11015544  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 29696197 - 29696261
Alignment:
Q  73 tatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatga 137  Q
    ||||||||| |||| ||||||||| | | || |||||||||||||||| ||| ||||||||||||    
T  29696197 tatttctatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatga 29696261  T

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