View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_229 (Length: 220)

Name: NF1199_low_229
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_229
NF1199_low_229
[»] chr6 (42 HSPs)
chr6 (11-201)||(28786041-28786231)
chr6 (33-201)||(28792184-28792352)
chr6 (11-201)||(27698728-27698916)
chr6 (11-201)||(27718613-27718803)
chr6 (12-201)||(27725079-27725267)
chr6 (31-201)||(27611236-27611406)
chr6 (11-201)||(26655752-26655942)
chr6 (11-201)||(26761723-26761913)
chr6 (11-201)||(28780902-28781092)
chr6 (11-201)||(27604939-27605135)
chr6 (18-201)||(27229004-27229185)
chr6 (11-201)||(26802201-26802395)
chr6 (11-201)||(27338299-27338482)
chr6 (11-201)||(27399039-27399222)
chr6 (46-201)||(27678744-27678899)
chr6 (28-174)||(26823626-26823766)
chr6 (38-201)||(31284078-31284241)
chr6 (30-197)||(27427841-27428006)
chr6 (130-201)||(27531431-27531502)
chr6 (46-201)||(27706636-27706791)
chr6 (27-107)||(26055738-26055818)
chr6 (27-106)||(25481554-25481633)
chr6 (31-106)||(25538356-25538431)
chr6 (27-106)||(26048657-26048736)
chr6 (27-106)||(26069826-26069905)
chr6 (27-106)||(26075708-26075787)
chr6 (27-106)||(26142677-26142756)
chr6 (114-201)||(26884029-26884116)
chr6 (80-201)||(27593254-27593375)
chr6 (77-201)||(26622805-26622929)
chr6 (77-201)||(26728783-26728907)
chr6 (78-201)||(26861446-26861569)
chr6 (80-201)||(27677848-27677969)
chr6 (27-106)||(25579529-25579610)
chr6 (95-204)||(28098600-28098709)
chr6 (114-203)||(28325347-28325436)
chr6 (85-152)||(26018770-26018837)
chr6 (85-152)||(26139474-26139541)
chr6 (142-198)||(26048739-26048795)
chr6 (142-198)||(26069908-26069964)
chr6 (114-186)||(26342183-26342255)
chr6 (122-198)||(28234438-28234514)
[»] scaffold0349 (3 HSPs)
scaffold0349 (11-201)||(14589-14777)
scaffold0349 (12-201)||(3656-3844)
scaffold0349 (11-174)||(8062-8225)
[»] scaffold0277 (2 HSPs)
scaffold0277 (33-201)||(4905-5073)
scaffold0277 (11-201)||(13866-14056)
[»] chr4 (7 HSPs)
chr4 (35-204)||(18699618-18699787)
chr4 (35-204)||(18655695-18655864)
chr4 (35-186)||(18731740-18731891)
chr4 (35-186)||(18679803-18679954)
chr4 (75-186)||(18724321-18724432)
chr4 (30-197)||(17989275-17989440)
chr4 (30-197)||(18073549-18073714)
[»] scaffold1254 (1 HSPs)
scaffold1254 (11-201)||(151-334)
[»] scaffold0419 (1 HSPs)
scaffold0419 (11-201)||(7295-7478)
[»] chr1 (2 HSPs)
chr1 (51-183)||(28164601-28164733)
chr1 (54-183)||(28127919-28128042)
[»] scaffold0003 (1 HSPs)
scaffold0003 (30-197)||(59357-59522)
[»] chr8 (2 HSPs)
chr8 (86-185)||(29274020-29274119)
chr8 (125-204)||(31903728-31903807)
[»] scaffold0038 (2 HSPs)
scaffold0038 (114-203)||(116662-116751)
scaffold0038 (122-198)||(34599-34675)
[»] scaffold0713 (1 HSPs)
scaffold0713 (85-152)||(5915-5982)
[»] chr2 (1 HSPs)
chr2 (152-198)||(3279592-3279638)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 28786041 - 28786231
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 110  Q
    |||||| ||||||||   |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28786041 cacagaccacaaaaacaaactcattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 28786140  T
Q  111 ccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28786141 cctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaa 28786231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 33 - 201
Target Start/End: Original strand, 28792184 - 28792352
Alignment:
Q  33 attcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggatt 132  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28792184 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatcctcttcattttcctatggatt 28792283  T
Q  133 cacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28792284 cacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaa 28792352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 27698916 - 27698728
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 110  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||    
T  27698916 cacagaacacaaaa-tttactcattcatattctgcattctcaaactcttttt-catcctatttctctcaattctcatggctatacaatcaccttcctcat 27698819  T
Q  111 ccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  27698818 ccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaa 27698728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 27718803 - 27718613
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 110  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  27718803 cacagaacacaaaaattcactcattcatattctgcattctcaaactcttttttcatcctatttctctcaattctcatggctatacaatcaccttcctcat 27718704  T
Q  111 ccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    || ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||    
T  27718703 cctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaa 27718613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 27725267 - 27725079
Alignment:
Q  12 acagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatc 111  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  27725267 acagaccacaaaaatttac-cattcatattctgcattctcaaactcttttttcatcctatttctctcaattgtcatggctatacaatcaccttcctcatc 27725169  T
Q  112 cacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  27725168 ctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaa 27725079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 27611406 - 27611236
Alignment:
Q  31 tcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatgga 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| | ||||||| ||  |||||||||||||||||    
T  27611406 tcattcatattctgcattctcaaactcttttttcatccaatttctctcaattttcatggctatgcaattagcttcctcttcttcttcattttcctatgga 27611307  T
Q  131 ttcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27611306 ttcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaa 27611236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 26655752 - 26655942
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 110  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  26655752 cacagaccacaaaaacttactcattcatattctgcattcccaaactcttttttcatccattttctctcaattctcatggctatacaatcaccttcctcat 26655851  T
Q  111 ccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    || |||||||||||||||| || |  |||||||||||||||||||||||||||| |||||| || |||||||||||| | |||||||||||    
T  26655852 cctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaa 26655942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 26761723 - 26761913
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 110  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  26761723 cacagaccacaaaaacttactcattcatattctgcattcccaaactcttttttcatccattttctctcaattctcatggctatacaatcaccttcctcat 26761822  T
Q  111 ccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    || |||||||||||||||| || |  |||||||||||||||||||||||||||| |||||| || |||||||||||| | |||||||||||    
T  26761823 cctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaa 26761913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 28780902 - 28781092
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 110  Q
    |||||| ||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||| ||||||||| |    
T  28780902 cacagaccacaaaaacaaactcattcatattctgaattctcaaactcttttttcatccaatttctctcaattatcatggctatgcaattaccttcctctt 28781001  T
Q  111 ccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    || |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  28781002 cctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaa 28781092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 27605135 - 27604939
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctc-- 108  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||      
T  27605135 cacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctcat 27605036  T
Q  109 ----atccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
        |||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| | |||||||||||    
T  27605035 cctcatcctcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaa 27604939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 27229004 - 27229185
Alignment:
Q  18 cacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttc 117  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||  ||||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||    
T  27229004 cacaaaaacatactcattcatattctgcattctaaaactctttt--catccaatttctctcaagtctcatggctatacaatcaccttcctcttcctcttc 27229101  T
Q  118 attttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| | |||||||||||    
T  27229102 attttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggcaatctctacaa 27229185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 26802201 - 26802395
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactctttt----ttcatccaatttctctcaattcttatggctatacaatcaccttcc 106  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||    ||||||||||||||| ||||| | |||||||| || || ||||||    
T  26802201 cacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttttttcatccaatttctcacaattttcatggctatgcagtctccttcc 26802300  T
Q  107 tcatccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  | |||||||||||    
T  26802301 tcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaa 26802395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 27338482 - 27338299
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 110  Q
    |||||| |||||||| |||||||||||||||||       |||||| ||||||||||  ||||||||||||||| |||||||| ||||||| |||||| |    
T  27338482 cacagaccacaaaaacttactcattcatattct-------caaacttttttttcatcttatttctctcaattctcatggctatgcaatcactttcctctt 27338390  T
Q  111 ccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    || ||||| |||||| ||| ||||  ||||| ||||||||||||||||||| || ||||||||   ||||||||||| | |||||||||||    
T  27338389 cctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgacactctttacggttttaccggcaatctctacaa 27338299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 27399222 - 27399039
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 110  Q
    |||||| |||||||| |||||||||||||||||       |||||| ||||||||||  ||||||||||||||| |||||||| ||||||| |||||| |    
T  27399222 cacagaccacaaaaacttactcattcatattct-------caaacttttttttcatcttatttctctcaattctcatggctatgcaatcactttcctctt 27399130  T
Q  111 ccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    || ||||| |||||| ||| ||||  ||||| ||||||||||||||||||| || ||||||||   ||||||||||| | |||||||||||    
T  27399129 cctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgacactctttacggttttaccggcaatctctacaa 27399039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 201
Target Start/End: Original strand, 27678744 - 27678899
Alignment:
Q  46 attctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtg 145  Q
    |||||||||||||||||||||| ||||||||| || ||| |||||||| |||||||||||||| ||||||||| |||||||||  | ||  ||||||||     
T  27678744 attctcaaactcttttttcatctaatttctctaaaatctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagta 27678843  T
Q  146 ttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    ||||||||||| || || | |||||||||  ||||||| ||| | |||||||||||    
T  27678844 ttcctcagtttcagaggaagtgacactcggtacggtttcaccgggaatctctacaa 27678899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 26823626 - 26823766
Alignment:
Q  28 tactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctat 127  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| || ||| ||||||      ||||| |||| |||    
T  26823626 tactcattcatattctgcattctcaaactctttcttcgtccaatttctctcaattctcatggctatgcagtcaacttcct------cttcagtttcatat 26823719  T
Q  128 ggattcacttaccaagtgttcctcagttttaggggcactgacactcg 174  Q
    |  ||||  ||||||||||| ||||||||||| ||| ||||||||||    
T  26823720 gatttcaaataccaagtgtttctcagttttagaggcgctgacactcg 26823766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 31284078 - 31284241
Alignment:
Q  38 tattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggattcactt 137  Q
    ||||||||||||||||| ||||| ||||||||  ||||||||| ||| |||||||| |||||| ||||||| ||| ||||| ||||||||| |||||  |    
T  31284078 tattctgcattctcaaattctttcttcatccatattctctcaaatctcatggctatgcaatcatcttcctcttcctcttcaatttcctatgtattcaaat 31284177  T
Q  138 accaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    ||||||| ||||| ||||| ||||| | |||||||||  | ||||| ||| | |||||||||||    
T  31284178 accaagtattccttagtttcaggggaagtgacactcggtatggtttcaccggcaatctctacaa 31284241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 27428006 - 27427841
Alignment:
Q  30 ctcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatgg 129  Q
    |||||||||||||||||||||||||||||| |  ||||  ||||||||||||||| ||||| || |||| ||||| ||  ||| |||||||||||||||     
T  27428006 ctcattcatattctgcattctcaaactcttct--catcttatttctctcaattctcatggccatgcaattacctttctattcctcttcattttcctatgc 27427909  T
Q  130 attcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctct 197  Q
    ||||| |||| | |||||||||| || || |||||| ||||||||  ||||||| ||| | |||||||    
T  27427908 attcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctct 27427841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 27531502 - 27531431
Alignment:
Q  130 attcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||    
T  27531502 attcacttaccaagtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaa 27531431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 201
Target Start/End: Complemental strand, 27706791 - 27706636
Alignment:
Q  46 attctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtg 145  Q
    |||||||||||||||||||||| ||||||||| || ||| |||||||| |||||||||| ||| ||||||||| |||||||||  | ||  ||||||||     
T  27706791 attctcaaactcttttttcatctaatttctctaaaatctcatggctatgcaatcacctttctcttccacttcaatttcctatgagtacaaataccaagta 27706692  T
Q  146 ttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    ||||||||||| || ||   |||||||||  ||||||| ||  | |||||||||||    
T  27706691 ttcctcagtttcagaggaggtgacactcggtacggtttcacaggcaatctctacaa 27706636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 26055738 - 26055818
Alignment:
Q  27 ttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcct 107  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||  |||| |||||||| |||||||| |||||||||||||    
T  26055738 ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcct 26055818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 25481554 - 25481633
Alignment:
Q  27 ttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcc 106  Q
    ||||||||||||||||| |||| ||||| | ||||||||||||| |||| |||||||| |||||||| ||||||||||||    
T  25481554 ttactcattcatattctccattttcaaagttttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 25481633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 25538356 - 25538431
Alignment:
Q  31 tcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcc 106  Q
    ||||||||||||| |||| ||||| ||||||||||||||| |||| |||||||| |||||||| ||||||||||||    
T  25538356 tcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 25538431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 26048657 - 26048736
Alignment:
Q  27 ttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcc 106  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||  |||| |||||||| |||||||| ||||||||||||    
T  26048657 ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcc 26048736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 26069826 - 26069905
Alignment:
Q  27 ttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcc 106  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||  |||| |||||||| |||||||| ||||||||||||    
T  26069826 ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcc 26069905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 26075708 - 26075787
Alignment:
Q  27 ttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcc 106  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||  |||| |||||||| |||||||| ||||||||||||    
T  26075708 ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcc 26075787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 26142677 - 26142756
Alignment:
Q  27 ttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcc 106  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||  |||| |||||||| |||||||| ||||||||||||    
T  26142677 ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcc 26142756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 26884029 - 26884116
Alignment:
Q  114 cttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || | |||||||||  | ||||| ||  |||||||||||||    
T  26884029 cttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaa 26884116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 27593375 - 27593254
Alignment:
Q  80 attcttatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacg 179  Q
    ||||| |||||||| |||||||||||||| ||||||||| |||||||||  | ||  |||||||| ||||||||||| || || | |||||||||  |||    
T  27593375 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 27593276  T
Q  180 gttttaccagaaatctctacaa 201  Q
    |||| ||| | |||||||||||    
T  27593275 gtttcaccggcaatctctacaa 27593254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 26622805 - 26622929
Alignment:
Q  77 tcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgcc 176  Q
    |||||| | |||||||| |||||||| ||||| ||| ||||| ||||||||  |||||  |||||||||||||| ||||| || |||| |||||||||      
T  26622805 tcaattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggt 26622904  T
Q  177 acggttttaccagaaatctctacaa 201  Q
    ||||||| ||  |||||||||||||    
T  26622905 acggtttcactggaaatctctacaa 26622929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 26728783 - 26728907
Alignment:
Q  77 tcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgcc 176  Q
    |||||| | |||||||| |||||||| ||||| ||| ||||| ||||||||  |||||  |||||||||||||| ||||| || |||| |||||||||      
T  26728783 tcaattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggt 26728882  T
Q  177 acggttttaccagaaatctctacaa 201  Q
    ||||||| ||  |||||||||||||    
T  26728883 acggtttcactggaaatctctacaa 26728907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 201
Target Start/End: Original strand, 26861446 - 26861569
Alignment:
Q  78 caattcttatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgcca 177  Q
    ||||||| |||||||| |||||||||| ||| ||| ||||  |||||||||||||||  ||||| || ||||||||||| || || | |||||||||  |    
T  26861446 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggta 26861545  T
Q  178 cggttttaccagaaatctctacaa 201  Q
     ||||||||| | |||||||||||    
T  26861546 tggttttaccggtaatctctacaa 26861569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 27677969 - 27677848
Alignment:
Q  80 attcttatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacg 179  Q
    ||||| |||||||| |||||||||||||| ||||||||| |||||||||  | ||  |||||||| ||||||| ||| || || | |||||||||  |||    
T  27677969 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcaatttcagaggaagtgacactcggtacg 27677870  T
Q  180 gttttaccagaaatctctacaa 201  Q
    |||| ||| | |||||||||||    
T  27677869 gtttcaccggcaatctctacaa 27677848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 25579529 - 25579610
Alignment:
Q  27 ttactcattcatattctgcattctcaaactcttttt--tcatccaatttctctcaattcttatggctatacaatcaccttcc 106  Q
    ||||||||||||||||| |||| ||||| | |||||  |||||||| |||| |||||||| |||||||| ||||||||||||    
T  25579529 ttactcattcatattctccattttcaaagtttttttattcatccaaattctttcaattctcatggctatgcaatcaccttcc 25579610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 204
Target Start/End: Complemental strand, 28098709 - 28098600
Alignment:
Q  95 caatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatc 194  Q
    |||||| ||||||| | | ||||||| || ||||||||||| ||  | ||||| || | |||||||||||| ||||||||  | ||||||||  ||||||    
T  28098709 caatcatcttcctctttctcttcattctcttatggattcacctatgacgtgtttcttaattttaggggcaccgacactcggtatggttttactggaaatc 28098610  T
Q  195 tctacaaagc 204  Q
    ||||||||||    
T  28098609 tctacaaagc 28098600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 28325347 - 28325436
Alignment:
Q  114 cttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaaag 203  Q
    |||| ||||||||||||||||| ||  | |||||||| |||||||| || | |||||||||  | ||||||||  |||||||||||||||    
T  28325347 cttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaag 28325436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 26018837 - 26018770
Alignment:
Q  85 tatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcctca 152  Q
    ||||||||| ||||||||||| ||  || | || |||||||||||| |||| ||||||||||||||||    
T  26018837 tatggctattcaatcaccttcgtctacctcatccttttcctatggactcacataccaagtgttcctca 26018770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 26139541 - 26139474
Alignment:
Q  85 tatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcctca 152  Q
    ||||| ||| ||||||||||||||  || | || |||||||||||| |||| ||||||||||||||||    
T  26139541 tatggttattcaatcaccttcctctacctcatccttttcctatggactcacataccaagtgttcctca 26139474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 26048739 - 26048795
Alignment:
Q  142 agtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctcta 198  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||| | ||||||||    
T  26048739 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctcta 26048795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 26069908 - 26069964
Alignment:
Q  142 agtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctcta 198  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||| | ||||||||    
T  26069908 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctcta 26069964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 26342255 - 26342183
Alignment:
Q  114 cttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttac 186  Q
    ||||||| || ||||||||||| ||  | |||||||||| ||||||||||| || ||||||| | ||||||||    
T  26342255 cttcattctcatatggattcacatatgatgtgttcctcaattttaggggcattggcactcgctatggttttac 26342183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 28234438 - 28234514
Alignment:
Q  122 tcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctcta 198  Q
    |||||||||||||| ||  | |||||||| |||||||| || | |||||||||| | |||||||||  |||||||||    
T  28234438 tcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctcta 28234514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 14777 - 14589
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 110  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||    
T  14777 cacagaacacaaaa-tttactcattcatattctgcattctcaaactcttttt-catcctatttctctcaattctcatggctatacaatcaccttcctcat 14680  T
Q  111 ccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  14679 ccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaa 14589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 3844 - 3656
Alignment:
Q  12 acagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatc 111  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  3844 acagaccacaaaaatttac-cattcatattctgcattctcaaactcttttttcatcctatttctctcaattgtcatggctatacaatcaccttcctcatc 3746  T
Q  112 cacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  3745 ctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaa 3656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 8225 - 8062
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 110  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  8225 cacagaacacaaaaattcactcattcatattctgcattctcaaactcttttttcatcctatttctctcaattctcatggctatacaatcaccttcctcat 8126  T
Q  111 ccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcg 174  Q
    || ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8125 cctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcg 8062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 5073 - 4905
Alignment:
Q  33 attcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggatt 132  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5073 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatcctcttcattttcctatggatt 4974  T
Q  133 cacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  4973 cacttaccaagtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctctacaa 4905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 14056 - 13866
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 110  Q
    |||||| ||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||| ||||||||| |    
T  14056 cacagaccacaaaaacaaactcattcatattctgaattctcaaactcttttttcatccaatttctctcaattatcatggctatgcaattaccttcctctt 13957  T
Q  111 ccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    || |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  13956 cctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaa 13866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 18699787 - 18699618
Alignment:
Q  35 tcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggattca 134  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  18699787 tcatattctgcattctcaaactcttttttcatctagtttctctcaattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattca 18699688  T
Q  135 cttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaaagc 204  Q
    ||||||||||||||||||| || |||||||||||||||||  ||||||||||  |  |||||||||||||    
T  18699687 cttaccaagtgttcctcagcttcaggggcactgacactcgtgacggttttactggccatctctacaaagc 18699618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 18655864 - 18655695
Alignment:
Q  35 tcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggattca 134  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||  |||||||||||||||||| |||||||||||||| ||||||    
T  18655864 tcatattctgcattctcaaactcttttttcatccagtttctctcaattttcatggctaggcaatcaccttcctcatcctcttcattttcctatcgattca 18655765  T
Q  135 cttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaaagc 204  Q
    ||||||||||||||||||| || ||||||| |||||||||  ||||||||||  |  |||||||||||||    
T  18655764 cttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactgggcatctctacaaagc 18655695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 35 - 186
Target Start/End: Complemental strand, 18731891 - 18731740
Alignment:
Q  35 tcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggattca 134  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  18731891 tcatattctgcattctcaaactcttttttcatccagtttctctcgattttcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattca 18731792  T
Q  135 cttaccaagtgttcctcagttttaggggcactgacactcgccacggttttac 186  Q
    ||||||||||||||||||| || ||||||| |||||||||  ||||||||||    
T  18731791 cttaccaagtgttcctcagcttcaggggcagtgacactcgtgacggttttac 18731740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 35 - 186
Target Start/End: Complemental strand, 18679954 - 18679803
Alignment:
Q  35 tcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggattca 134  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||| |||||||||||||||| | |||||||||||||| ||||||    
T  18679954 tcatattctgcattctcaaactcttttttcatccagtttctctctattttcatggctatgcaatcaccttcctcattctcttcattttcctatcgattca 18679855  T
Q  135 cttaccaagtgttcctcagttttaggggcactgacactcgccacggttttac 186  Q
    ||||||||||||||||||| || ||||||| |||||||||  ||||||||||    
T  18679854 cttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttac 18679803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 18724432 - 18724321
Alignment:
Q  75 tctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcg 174  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||    
T  18724432 tctcaattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcg 18724333  T
Q  175 ccacggttttac 186  Q
      ||||||||||    
T  18724332 taacggttttac 18724321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 17989440 - 17989275
Alignment:
Q  30 ctcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatgg 129  Q
    |||||||||||||||||||||||||||||| |  ||||  ||||||||||||||| ||||| || |||| ||||| ||  ||| |||||||||||||||     
T  17989440 ctcattcatattctgcattctcaaactcttct--catcttatttctctcaattctcatggccatgcaattacctttctattcctcttcattttcctatgc 17989343  T
Q  130 attcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctct 197  Q
    ||||| |||| | |||||||||| || || |||||| ||||||||  ||||||| ||| | |||||||    
T  17989342 attcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctct 17989275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 18073549 - 18073714
Alignment:
Q  30 ctcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatgg 129  Q
    |||||||||||||||||||||||||||||| |  ||||  ||||||||||||||| ||||| || |||| ||||| ||  ||| |||||||||||||||     
T  18073549 ctcattcatattctgcattctcaaactcttct--catcttatttctctcaattctcatggccatgcaattacctttctattcctcttcattttcctatgc 18073646  T
Q  130 attcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctct 197  Q
    ||||| |||| | |||||||||| || || |||||| ||||||||  ||||||| ||| | |||||||    
T  18073647 attcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctct 18073714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 334 - 151
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 110  Q
    |||||| |||||||| |||||||||||||||||       ||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |||| |    
T  334 cacagaccacaaaaacttactcattcatattct-------caaactcttttttcatctaatttctctcaattctcatggctatgcaatcacctccctctt 242  T
Q  111 ccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    || |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||    
T  241 cctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaa 151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 7295 - 7478
Alignment:
Q  11 cacagaacacaaaaatttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 110  Q
    |||||| |||||||| ||||||||||||||||       |||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |||| |    
T  7295 cacagaccacaaaaacttactcattcatattc-------tcaaactcttttttcatctaatttctctcaattctcatggctatgcaatcacctccctctt 7387  T
Q  111 ccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaa 201  Q
    || |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||    
T  7388 cctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaa 7478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 28164733 - 28164601
Alignment:
Q  51 caaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcct 150  Q
    ||||||||||| ||||||||||||| |||||||| |||||||||| ||| | |||||| ||| ||||| |||||||||||||||| ||||||||||||||    
T  28164733 caaactcttttctcatccaatttctgtcaattctcatggctatacgatcgcattcctcttcctcttcaatttcctatggattcacataccaagtgttcct 28164634  T
Q  151 cagttttaggggcactgacactcgccacggttt 183  Q
    |||||||||||||| |||||||||  |||||||    
T  28164633 cagttttaggggcagtgacactcgtgacggttt 28164601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 54 - 183
Target Start/End: Complemental strand, 28128042 - 28127919
Alignment:
Q  54 actcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcctcag 153  Q
    |||||||| ||||||||||| | |||||||| |||||||| ||||||| ||||||      |||| |||||||||||||||| |||||||||||||||||    
T  28128042 actcttttctcatccaatttttgtcaattctcatggctatgcaatcacattcctc------ttcaatttcctatggattcacataccaagtgttcctcag 28127949  T
Q  154 ttttaggggcactgacactcgccacggttt 183  Q
     || ||||||| |||||||||  |||||||    
T  28127948 cttcaggggcagtgacactcgtgacggttt 28127919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 59357 - 59522
Alignment:
Q  30 ctcattcatattctgcattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatccacttcattttcctatgg 129  Q
    |||||||||||||||||||||||||||||| |  ||||  ||||||||||||||| ||||| || |||| ||||| ||  ||| |||||||||||||||     
T  59357 ctcattcatattctgcattctcaaactcttct--catcttatttctctcaattctcatggccatgcaattacctttctattcctcttcattttcctatgc 59454  T
Q  130 attcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctct 197  Q
    ||||| |||| | |||||||||| || || |||||| ||||||||  ||||||| ||| | |||||||    
T  59455 attcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctct 59522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 29274119 - 29274020
Alignment:
Q  86 atggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggtttta 185  Q
    |||||||| |||||||||||||| ||| ||||| | || ||||||||||||||||| || |||||||  ||||| |||  |||||||||  |||||||||    
T  29274119 atggctatgcaatcaccttcctcttcctcttcaatctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacggtttta 29274020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 31903728 - 31903807
Alignment:
Q  125 tatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaaagc 204  Q
    ||||||||||| ||| | ||||||||||| ||||| |||   ||||||||| | ||||||||  ||||||||||||||||    
T  31903728 tatggattcacctacgatgtgttcctcagctttagaggcttagacactcgctatggttttactggaaatctctacaaagc 31903807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 116662 - 116751
Alignment:
Q  114 cttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctctacaaag 203  Q
    |||| ||||||||||||||||| ||  | |||||||| |||||||| || | |||||||||  | ||||||||  |||||||||||||||    
T  116662 cttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaag 116751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 34599 - 34675
Alignment:
Q  122 tcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccagaaatctcta 198  Q
    |||||||||||||| ||  | |||||||| |||||||| || | |||||||||| | |||||||||  |||||||||    
T  34599 tcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctcta 34675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 5915 - 5982
Alignment:
Q  85 tatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcctca 152  Q
    ||||| ||| ||||||||||||||  || | || |||||||||||| |||| ||||||||||||||||    
T  5915 tatggttattcaatcaccttcctctacctcatccttttcctatggactcacataccaagtgttcctca 5982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 3279592 - 3279638
Alignment:
Q  152 agttttaggggcactgacactcgccacggttttaccagaaatctcta 198  Q
    |||||||||||||||||||||||| | ||||||||  ||||||||||    
T  3279592 agttttaggggcactgacactcgctatggttttactggaaatctcta 3279638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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