View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_24 (Length: 586)
Name: NF1199_low_24
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 30 - 574
Target Start/End: Original strand, 36252861 - 36253405
Alignment:
| Q |
30 |
caacaatggtgagaaacaagacttcatggtttcttcaatgaagccccgtagactagtagcatcgctattgctctgataattttttgtgtttacatcatct |
129 |
Q |
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| T |
36252861 |
caacaatggtgagaaacaagacttcatggtttcttcaatgaagccccgtagactagtagcatcgctattgctctgataattttttgagtttacatcatct |
36252960 |
T |
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| Q |
130 |
gttgttaacctcacacgcttgtgtgcccttttatctgtttcttcacaattgtcaacatcttccgccttcaacttaatgttctcaataagatcaggacttt |
229 |
Q |
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| T |
36252961 |
gttgttaacctcacacgcttgtgtgcccttttatctgtttcttcacaattgtcaacatcttccgccttcaacttaatgttctcaataagatcaggacttt |
36253060 |
T |
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| Q |
230 |
caggaacaggtcttgaatcatcaacatccaaaacgtcatggtccgtgtcattgccccaaatcttgtgggaaatttcgaaaatggcttgttcctgggggat |
329 |
Q |
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| T |
36253061 |
caggaacaggtcttgaatcatcaacatccaaaacgtcatggtccgtgtcattgccccaaatcttgtgggaaatttcgaaaatggcttgttcctgggggat |
36253160 |
T |
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| Q |
330 |
tttgaaagaaatctgaacctctttgcctttgtccaaagtcatcttgtgtttcctttttaacctacgtagcttctcaacaagctggttcctattgaattcc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36253161 |
tttgaaagaaatctgaacctctttgcctttgtccaaagtcatcttgtgtttcctttttaacctacgtagcttctcaacaagctggttcctattgaattcc |
36253260 |
T |
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| Q |
430 |
acgctgaatttgggaataacttgatcatagaatgaagctacgccgctttgaatagtagtatttgctcttccttgctgtttaatgtaatctagatatccct |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36253261 |
acgctgaatttgggaataacttgatcatagaatgaagctacgccgctttgaatagtagtatttgctcttccttgctgtttaatgtaatctagatatccct |
36253360 |
T |
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| Q |
530 |
tcaacagttcaatctcatcctgcttcgtccatagcctctgatatt |
574 |
Q |
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| T |
36253361 |
tcaacagttcaatctcatcctgcttcgtccatagcctctgatatt |
36253405 |
T |
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