View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_27 (Length: 580)
Name: NF1199_low_27
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 80 - 568
Target Start/End: Original strand, 45518242 - 45518725
Alignment:
| Q |
80 |
acaatcgcattcttgagttaaaagaatcatcattcatccgtaaccaaaaattgtgcaaatcagtttttgtgatatctgatttccattgcatgcatccccg |
179 |
Q |
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| T |
45518242 |
acaatcgcattcttgagttaaaagaatcatcattcatccgtaaccaaaaattgtgcaaatcagtttttgtgatatctgatttccattgcatgcatccccg |
45518341 |
T |
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| Q |
180 |
tagtgcccttaacaattctctggccaactctggtgatgattgcatccctatccctatatataattaaaataatgatatagccaaactaagagagtataga |
279 |
Q |
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| T |
45518342 |
tagtgcccttaacaattctctggccaactctggtgatgattgcatccctatccctata----attaaaataatgatatagccaaactaagag--tataga |
45518435 |
T |
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| Q |
280 |
tatgatttatttaagaaaagaaaaaatggtaaaggagaattaaaaatgaagaagtgttaattaacaacat-actcatgattgcaataaaataaagtatag |
378 |
Q |
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| T |
45518436 |
tatgatttatttaagaaaagaaaaaatggtaaaggagaattaaaaatgaagaagtgttaattaacaacattactcatgattgaaataaaataaagtatag |
45518535 |
T |
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| Q |
379 |
gaaaatgaataattaaaatgatacaagttgtcttatataatggaattttagtgtatgctgagaacatggctaaggtggctaattaaattcctctattcat |
478 |
Q |
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| T |
45518536 |
gaaaatgaataattaaaatgatacaagttgtcttatataatggaattttagtgtatgctgagaacatggctaaggtggctaattaaattcctctattcat |
45518635 |
T |
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| Q |
479 |
taattattatggattcttatgttacttgaacggtgccacaaggcaaacacaaaagaacagaccaaggacacacatcgaaatagaattatc |
568 |
Q |
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| T |
45518636 |
taattattatggattcttatgttacttgaacggtgccacaaggcaaacacaaaagaacagaccaaggacacacatcgaaatagacttatc |
45518725 |
T |
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