View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_28 (Length: 578)
Name: NF1199_low_28
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 18219119 - 18219670
Alignment:
| Q |
1 |
atgtttggccacataaaggtccctcttggtttgcaaatttggaaaccacttttcagcctttctatctttgctgctttgtcctctgctgctctgcttccta |
100 |
Q |
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| T |
18219119 |
atgtttggccacataaaggtccctcttggtttgcaaatttggaaaccacttttcagcctttctatctttgctgctttgtcctctgctgctctgcttccta |
18219218 |
T |
|
| Q |
101 |
ctaccatttgtgtgtcttctgattttgnnnnnnngacattattacctttctcttcctcccttgtctcttgtccaatgctttctgtcaatgatgttggtcc |
200 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
18219219 |
ctaccatttgtgtgtctgctgattttgtttttttgacattattacctttctcttc---------------tccaatgttttctgtcaatgatgttggtcc |
18219303 |
T |
|
| Q |
201 |
tagcaataacgctggtggtgttaatgattctgacatttgtggttcttctactagtgttggtttcagcattcctatttgatcctgcattaagtgcttttca |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
18219304 |
aagcaataacactggtggtgttaatgattctgacatttgtggttcttctactagtgttggtttcagcattcccatttgatcctacattaagtgcatttca |
18219403 |
T |
|
| Q |
301 |
tcagtggcaagcaaaatccttttcagttagcttgaaagacagtaattacagtattgattttcatcagtcttcaacatttattggcatagatggatgagaa |
400 |
Q |
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||||||||||| ||||| | ||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |
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| T |
18219404 |
tcagtggcaagaaaaattcatttcatttaggttgaaagccagtaattacagtattgattttcatcagtcttcaacatttattcggatagatggatgggaa |
18219503 |
T |
|
| Q |
401 |
tgtaaagtaaactataacaagtaacatcacacaatatcataatgggatttcttatagttctgttcatactctatggtacactctgaacaaataaatatag |
500 |
Q |
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| T |
18219504 |
tataaagtaaaatataacaagcaacatcacacaatatcataatgggattt-ttataattctgttcatactctatggtacactctggactaataaatatag |
18219602 |
T |
|
| Q |
501 |
atttttgagggtaaagttcatagcaatcataacatcattattttgcaatgaaaacactcaatcctatg |
568 |
Q |
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| T |
18219603 |
atttttgagggtaaagttcatagcaatcataacatcattattttgcaatgaaaacactcaatcctatg |
18219670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 43011096 - 43011226
Alignment:
| Q |
89 |
ctctgcttcctactaccatttgtgtgtcttctgattttgnnnnnnngacattattacctttctcttcctcccttgtctcttgtccaatgctttctgtcaa |
188 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
43011096 |
ctctgcttcctactaccatttgtgtgtctgctgattttgttttgttcacgttagtacctttctcttcctcccttgtctcatgtccaatgttttctgtcaa |
43011195 |
T |
|
| Q |
189 |
tgatgttggtcctagcaataacgctggtggt |
219 |
Q |
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| T |
43011196 |
tgatgttggtccaagcaatgacgctggtggt |
43011226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 43011222 - 43011287
Alignment:
| Q |
239 |
gtggttcttctactagtgttggtttcagcattcctatttgatcctgcattaagtgcttttcatcag |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
43011222 |
gtggttcttctactagtgttggtttcagcattcccatttgatcctgcgttaagtgcttttcatcag |
43011287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 43011303 - 43011365
Alignment:
| Q |
349 |
cagtattgattttcatcagtcttcaacatttattggcatagatggatgagaatgtaaagtaaa |
411 |
Q |
| |
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| T |
43011303 |
cagtattgattttcatcagtcttcaacatttattcgcatagatggatgagaatataaagtaaa |
43011365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 516 - 568
Target Start/End: Original strand, 43011444 - 43011496
Alignment:
| Q |
516 |
gttcatagcaatcataacatcattattttgcaatgaaaacactcaatcctatg |
568 |
Q |
| |
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||||||| ||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
43011444 |
gttcataccaatcataaaatcattattttgcaatgaaaacgctcaatcctatg |
43011496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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