View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_29 (Length: 563)
Name: NF1199_low_29
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 30 - 415
Target Start/End: Original strand, 30020224 - 30020599
Alignment:
| Q |
30 |
tcttaagcaatgaagtgaagtgttttaaaccttcctgtgagcatacatttagcagaaacacatataggtatcaaacttgtatagggaagatcatagaata |
129 |
Q |
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| T |
30020224 |
tcttaagcaatgaagtgaagtgttttaaaccttcctgtgagcatacatttagcagaaacacatataggtatcaaacttgtatagggaagatcatagaata |
30020323 |
T |
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| Q |
130 |
cttgtagtacacaatttgtccttcctgaatggttggttggtgttggcggagcaatttatgtatgttcagcgccattcactattgctatgttatcatcagg |
229 |
Q |
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| T |
30020324 |
cttgtagtacacaatttgtccttcctgaatggttggt----------ggagcaatttatgtatgttcagcgccattcactattgctatgttatcatcagg |
30020413 |
T |
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| Q |
230 |
agcaaagagcaacactttcttcttggaaatcaatttcaagattatgtgtggaatattctttattgacttctgaggaagcttcaggttggaatttcttaga |
329 |
Q |
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| T |
30020414 |
agcaaagagcaacactttcttcttggaaatcaatttcaagattatgtgtggaatattctttattgacctctgaggaagcttcgggttggaatttcttaga |
30020513 |
T |
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| Q |
330 |
aaaatccgtatcgttttcctcatccatctctaccactacgaaactaatgctctttgcatgatctagaataaaaggctcatcacata |
415 |
Q |
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| T |
30020514 |
aaaatgcgtatcgttttcctcatccatctctaccactacgaaactaatgctctttgcatgatctagaataaaaggctcatcacata |
30020599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 424 - 563
Target Start/End: Original strand, 30020946 - 30021099
Alignment:
| Q |
424 |
taaacatttctaaattaaaatacataagagtaggctcccaaacatccagacagtggatagctataaacagtacataaacttg--------------gatc |
509 |
Q |
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| T |
30020946 |
taaatatttcaaaattaaaatacataagagtaggctcccaaacatccagacagtggatagctataaacagtacataaacttggatcaaataagctagatc |
30021045 |
T |
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| Q |
510 |
aaataagagcactcgcatcaagcttattttaaatagaaggtaagaactaacaca |
563 |
Q |
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| T |
30021046 |
aaataagaacactcgcatcaagcttattttaaatagaaggtaaaaactaacaca |
30021099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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