View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_low_3 (Length: 892)
Name: NF1199_low_3
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 8 - 794
Target Start/End: Complemental strand, 32898996 - 32898208
Alignment:
| Q |
8 |
ccaagaatatcaccaccaccgggaaaaggctgcgccgcggccgccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898996 |
ccaagaatatcaccaccaccgggaaaaggctgcgccgcggcggccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaa |
32898897 |
T |
|
| Q |
108 |
aagcagaaacaccgacattcctctgaaaccttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| |
|
|
| T |
32898896 |
aagcagaaacaccgacattcctctgaaaccttgcaaaaggatccattgttgcattcatagaaggtgaaacaagatcaaaacttccattgctgttgctgtt |
32898797 |
T |
|
| Q |
208 |
gaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtag |
307 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898796 |
gaagttgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtag |
32898697 |
T |
|
| Q |
308 |
ttacacatttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaactgaagaaggtgaacttggtt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898696 |
ttacacatttgaccaccgttgaatgaggcggtgctagcggcggtgtagggagatgaatcaagaagaggtggaaggtaaactgaagaaggtgaacttggtt |
32898597 |
T |
|
| Q |
408 |
caggacaaagactcatgctgttgttactggctgagtttgaggctattttggtcttttttgcaccacttgcagtggcggctgtcacggtggtgcttccatt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
32898596 |
caggacaaagactcatgctgttgttactggctgagtttgaggctattttggtcttttttgcaccacttgtggtggcaactgtcacggtggtgcttccatt |
32898497 |
T |
|
| Q |
508 |
tccagtgttgctcttttgaaacacacgtgaaatgacccattcatccttcataagttcnnnnnnntagatggaagaattagtt---ataatgaaaacaaaa |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
32898496 |
tccagtgttgctcttttgaaacacacgtgaaatgacccattcatccttcataagttc-aaaaaatagatgtaagaattagttataataatgaaaacaaaa |
32898398 |
T |
|
| Q |
605 |
ttcaaaagcatgttattaacttattatgtaactgtttataaagtgagattttggtagaaaaagctgaacatggaagcattaatattttgaaggtagttaa |
704 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32898397 |
ttcaaaagcatgttattaacttattatgtaactgtttataaagtgagattttggtagaaaaagctgaacatggaagcattaatattttgtaggtagttaa |
32898298 |
T |
|
| Q |
705 |
tgataattgatgatgataaactaaaccctatgcaaaatgaaaactgtggtgaaaatagcagtgatatacgtacatactagtttttagcat |
794 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
32898297 |
tgataattgatgatgataaactaaaccctatgcaaaatgaaaactgtggtgaaaatggcagtgatatacgtacatactagttttaagcat |
32898208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 137 - 556
Target Start/End: Complemental strand, 17415196 - 17414792
Alignment:
| Q |
137 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
236 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||||| |
|
|
| T |
17415196 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttg |
17415097 |
T |
|
| Q |
237 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
17415096 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgg------------agttacacatttggtcgccgttgaatgtggc |
17415009 |
T |
|
| Q |
337 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaactgaagaaggtgaacttggttcaggacaaagactcatgctgttgttactg |
436 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
17415008 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaacggaagaaggtgaacttggttctggacagagactcatgctgttgttgttg |
17414909 |
T |
|
| Q |
437 |
gctgagtttgaggctattttggtcttttttgcaccacttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtg |
536 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
17414908 |
gctgagtttgaggctattttggtctgttttgcaccactt---gtggtggctgtcacggtggtgcttccattttcaatgttgctcttttgaaacacacgtg |
17414812 |
T |
|
| Q |
537 |
aaatgacccattcatccttc |
556 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17414811 |
aaatgacccattcatccttc |
17414792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 137 - 556
Target Start/End: Original strand, 20409621 - 20410025
Alignment:
| Q |
137 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
236 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| || ||||||||||| |
|
|
| T |
20409621 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttg |
20409720 |
T |
|
| Q |
237 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
20409721 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgg------------agttacacatttggtcgccgttgaatgtggc |
20409808 |
T |
|
| Q |
337 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaactgaagaaggtgaacttggttcaggacaaagactcatgctgttgttactg |
436 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
20409809 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaacggaagaaggtgaacttggttctggacagagactcatgctgttgttgttg |
20409908 |
T |
|
| Q |
437 |
gctgagtttgaggctattttggtcttttttgcaccacttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtg |
536 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20409909 |
gctgagtttgaggctattttggtctgttttgcaccactt---gtggtggctgtcacggtggtgcttccatttccaacgttgctcttttgaaacacacgtg |
20410005 |
T |
|
| Q |
537 |
aaatgacccattcatccttc |
556 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20410006 |
aaatgacccattcatccttc |
20410025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 137 - 556
Target Start/End: Complemental strand, 46312720 - 46312316
Alignment:
| Q |
137 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
236 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| || ||||||||||| |
|
|
| T |
46312720 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttg |
46312621 |
T |
|
| Q |
237 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
46312620 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgg------------agttacacatttggtcgccgttgaatgtggc |
46312533 |
T |
|
| Q |
337 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaactgaagaaggtgaacttggttcaggacaaagactcatgctgttgttactg |
436 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
46312532 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaacggaagaaggtgaacttggttctggacaaagactcatgctgttgttgttg |
46312433 |
T |
|
| Q |
437 |
gctgagtttgaggctattttggtcttttttgcaccacttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtg |
536 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46312432 |
gctgagtttgaggctattttggtctgttttgcaccactt---gtggtggctgtcacgatggtgcttccatttccaatgttgctcttttgaaacacacgtg |
46312336 |
T |
|
| Q |
537 |
aaatgacccattcatccttc |
556 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
46312335 |
aaatgacccatacatccttc |
46312316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 462 - 556
Target Start/End: Complemental strand, 2999830 - 2999739
Alignment:
| Q |
462 |
tttttgcaccacttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcatccttc |
556 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2999830 |
tttttgcaccacttg---tggtggctgtcacggtggtgcttccattttcaatgttgctcttttgaaacacacgtgaaatgacccattcatccttc |
2999739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 137 - 556
Target Start/End: Complemental strand, 40169283 - 40168888
Alignment:
| Q |
137 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
236 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||||| |
|
|
| T |
40169283 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttg |
40169184 |
T |
|
| Q |
237 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
336 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
40169183 |
atgttgt---------ggagaaacaggacacgtgctcctttagatcggtgttgttgg------------agttacacatttggtcgccgttgaatgtggc |
40169105 |
T |
|
| Q |
337 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaactgaagaaggtgaacttggttcaggacaaagactcatgctgttgttactg |
436 |
Q |
| |
|
| ||||||| || ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||| ||||||| || |
|
|
| T |
40169104 |
gatgctagcagcggtgtaaggagatgaatcaagaagaggtggaagataaacggaagaaggtgaacttggttctggacagagactcatgttgttgttgttg |
40169005 |
T |
|
| Q |
437 |
gctgagtttgaggctattttggtcttttttgcaccacttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtg |
536 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40169004 |
gctgagtttgaggctattttggtctgttttgcaccactt---gtggtggctgtcacggtggtgcttccatttccaatgttgctcttttgaaacacacgtg |
40168908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 46482987 - 46483093
Alignment:
| Q |
159 |
cattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaa |
258 |
Q |
| |
|
||||| ||||||| ||||| |||||||| |||||||||||||||| | ||||| ||||||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
46482987 |
cattcgtagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtggacagagacaacatttgatgttctagatattgtggagaa |
46483086 |
T |
|
| Q |
259 |
acaggac |
265 |
Q |
| |
|
| ||||| |
|
|
| T |
46483087 |
ataggac |
46483093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 46482880 - 46482960
Alignment:
| Q |
38 |
tgcgccgcggccgccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaagcagaaaca |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
46482880 |
tgcgccgcggccgccgtggagaaaaagaaaggaagctggagattatcttgtagtgacctcaatctaggaaaaatagaaaca |
46482960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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