View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_30 (Length: 556)

Name: NF1199_low_30
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_30
NF1199_low_30
[»] chr8 (3 HSPs)
chr8 (29-545)||(12556454-12556962)
chr8 (33-100)||(41337643-41337709)
chr8 (37-98)||(26368315-26368376)
[»] chr4 (4 HSPs)
chr4 (34-102)||(12086760-12086828)
chr4 (37-120)||(45881545-45881628)
chr4 (38-100)||(22825595-22825657)
chr4 (41-104)||(8000011-8000073)
[»] chr1 (2 HSPs)
chr1 (33-101)||(43040187-43040255)
chr1 (62-102)||(25579212-25579252)
[»] chr7 (2 HSPs)
chr7 (55-120)||(22608501-22608566)
chr7 (37-89)||(43455919-43455971)
[»] chr2 (1 HSPs)
chr2 (34-133)||(43752730-43752829)
[»] chr3 (1 HSPs)
chr3 (55-93)||(5399877-5399915)
[»] chr6 (2 HSPs)
chr6 (55-103)||(32842888-32842936)
chr6 (58-94)||(34082178-34082214)
[»] chr5 (1 HSPs)
chr5 (33-101)||(43427771-43427839)


Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 29 - 545
Target Start/End: Complemental strand, 12556962 - 12556454
Alignment:
Q  29 actctgtccatgaggtgtcagctcattggtaagagtttgactttgtaacatcaagagacgaagttcaaatcccatacgagacagttgtaaaacggacatt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  12556962 actctgtccatgaggtgtcagctcattggtaagagtttgactttgtaacatcaagagacgaagtttaaatcccatacgagatagttgtaaaacggacatt 12556863  T
Q  129 agtgttatagtttattaataataattttcatttccccaaaattgttttttaaaaaggtagacatgcgctaaagagcatctgcaatcaatttaatccactg 228  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12556862 agt--------ttattaataataattttcatttccccaaaattgttttttaaaaaggtagacatgcgctaaagagcatccgcaatcaatttaatccactg 12556771  T
Q  229 ctgcaaggtgttggctagcttagtggctgatcaccggattgcataaaagcttcaggttaaagatttattggaatgaggtaggactaatattgaaagggga 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12556770 ctgcaaggtgttggctagcttagtggctgatcaccggattgcataaaagcttcaggttaaagatttaatggaatgaggtaggactaatattgaaagggga 12556671  T
Q  329 taccccatctttccatgttaaagttcttggaacactggaaaaaggtgctgacaggtggcacatctgcatggtatgaatttaaggtcgtcggattcgttat 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12556670 taccccatctttccatgttaaagttcttggaacactggaaaaaggtgctgacaggtggcacatctgcatggtatgaatttaaggtcgtcggattcgttat 12556571  T
Q  429 tctaactgattccttgtattagccatcaaattaagtaaacatttattcatatcttagaaaaataataaagttgaagtttcaaatgaaagtgcaacgtcgc 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12556570 tctaactgattccttgtattagccatcaaattaagtaaacatttattcatatcttagaaaaataataaagttgaagtttcaaatgaaagtgcaacgtcgc 12556471  T
Q  529 aaaccctacgccttcat 545  Q
    |||||||||||||||||    
T  12556470 aaaccctacgccttcat 12556454  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 41337643 - 41337709
Alignment:
Q  33 tgtccatgaggtgtcagctcattggtaagagtttgactttgtaacatcaagagacgaagttcaaatcc 100  Q
    ||||||| ||||||||||||| ||||||||||||||| || |||| ||||| | || |||||||||||    
T  41337643 tgtccataaggtgtcagctcagtggtaagagtttgaccttataacctcaag-ggcggagttcaaatcc 41337709  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 26368315 - 26368376
Alignment:
Q  37 catgaggtgtcagctcattggtaagagtttgactttgtaacatcaagagacgaagttcaaat 98  Q
    ||||||||||  ||||| |||||||||||||   |||||||||||||  |||||||||||||    
T  26368315 catgaggtgttggctcagtggtaagagtttggtcttgtaacatcaaggaacgaagttcaaat 26368376  T

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Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 12086760 - 12086828
Alignment:
Q  34 gtccatgaggtgtcagctcattggtaagagtttgactttgtaacatcaagagacgaagttcaaatccca 102  Q
    |||||||||||||||||||| || ||||||||||||||||||| |||||||||| |||||| |||||||    
T  12086760 gtccatgaggtgtcagctcagtgataagagtttgactttgtaatatcaagagacaaagttcgaatccca 12086828  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 45881545 - 45881628
Alignment:
Q  37 catgaggtgtcagctcattggtaagagtttgactttgtaacatcaagagacgaagttcaaatcccatacgagacagttgtaaaa 120  Q
    |||||||||||| |||| ||||||||| |||||||||| || |||||| ||  |||||||||| |||| |  ||||||||||||    
T  45881545 catgaggtgtcaactcagtggtaagagcttgactttgttacctcaagaaacagagttcaaatctcatatggaacagttgtaaaa 45881628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 22825657 - 22825595
Alignment:
Q  38 atgaggtgtcagctcattggtaagagtttgactttgtaacatcaagagacgaagttcaaatcc 100  Q
    ||||||||||| |||| ||||||||||||||| |||||| || ||| || |||||||||||||    
T  22825657 atgaggtgtcatctcagtggtaagagtttgaccttgtaatatgaagggatgaagttcaaatcc 22825595  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 8000011 - 8000073
Alignment:
Q  41 aggtgtcagctcattggtaagagtttgactttgtaacatcaagagacgaagttcaaatcccata 104  Q
    ||||||||||||| ||| || |||||||||||||||| ||||| |||| | |||||||||||||    
T  8000011 aggtgtcagctcaatggaaaaagtttgactttgtaacctcaag-gacggatttcaaatcccata 8000073  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 43040255 - 43040187
Alignment:
Q  33 tgtccatgaggtgtcagctcattggtaagagtttgactttgtaacatcaagagacgaagttcaaatccc 101  Q
    ||||||||||||| ||||||| |||||||||  |||| ||||||| |||||||||| ||||||||||||    
T  43040255 tgtccatgaggtgccagctcagtggtaagagcctgaccttgtaacctcaagagacggagttcaaatccc 43040187  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 25579252 - 25579212
Alignment:
Q  62 agtttgactttgtaacatcaagagacgaagttcaaatccca 102  Q
    |||||||||||||||||||||| |||  |||||||||||||    
T  25579252 agtttgactttgtaacatcaagtgacatagttcaaatccca 25579212  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 22608566 - 22608501
Alignment:
Q  55 tggtaagagtttgactttgtaacatcaagagacgaagttcaaatcccatacgagacagttgtaaaa 120  Q
    |||||||||||||||||| |||| | ||| |||||||||||||||||  | |||| ||||||||||    
T  22608566 tggtaagagtttgactttataacctaaagggacgaagttcaaatccctgatgagaaagttgtaaaa 22608501  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 43455919 - 43455971
Alignment:
Q  37 catgaggtgtcagctcattggtaagagtttgactttgtaacatcaagagacga 89  Q
    ||||||||||||||||| | ||||||||||||| ||||||| |||||| ||||    
T  43455919 catgaggtgtcagctcactagtaagagtttgaccttgtaacctcaagaaacga 43455971  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 43752730 - 43752829
Alignment:
Q  34 gtccatgaggtgtcagctcattggtaagagtttgactttgtaacatcaagagacgaagttcaaatcccatacgagacagttgtaaaacggacattagtgt 133  Q
    |||||||| ||||||||| | |||||| || |||| |||||||  |||||||||  |||||||||||| |   | |||||||||||| || |||||||||    
T  43752730 gtccatgacgtgtcagcttagtggtaaaagcttgaatttgtaatctcaagagactgagttcaaatccccttaaatacagttgtaaaatggtcattagtgt 43752829  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 5399877 - 5399915
Alignment:
Q  55 tggtaagagtttgactttgtaacatcaagagacgaagtt 93  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  5399877 tggtaagagtttgactttgtaaccttaagagacgaagtt 5399915  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 32842936 - 32842888
Alignment:
Q  55 tggtaagagtttgactttgtaacatcaagagacgaagttcaaatcccat 103  Q
    |||| |||||||||| ||||| |||||| ||||||||||||||| ||||    
T  32842936 tggttagagtttgacattgtatcatcaaaagacgaagttcaaattccat 32842888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 34082214 - 34082178
Alignment:
Q  58 taagagtttgactttgtaacatcaagagacgaagttc 94  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  34082214 taagagtttgactttgtaatatcaagagacggagttc 34082178  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 43427771 - 43427839
Alignment:
Q  33 tgtccatgaggtgtcagctcattggtaagagtttgactttgtaacatcaagagacgaagttcaaatccc 101  Q
    |||||| ||||||  |||||| ||||||||||||| | ||||||| ||||| || | ||||||||||||    
T  43427771 tgtccaagaggtgctagctcagtggtaagagtttggccttgtaacctcaagggagggagttcaaatccc 43427839  T

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