View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_33 (Length: 543)
Name: NF1199_low_33
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 290 - 538
Target Start/End: Original strand, 18543391 - 18543639
Alignment:
| Q |
290 |
ttattgatttgatgaaaattaatggatatttatttagtcttgcccttaaaacaaaaccacacacaatgcatattctcaagttggagaaaatagacatgga |
389 |
Q |
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| T |
18543391 |
ttattgatttgatgaaaattaatggatatttatttagtcttgcccttaaaacaaaaccacacaatatgcatattctcaagttggagaaaatagacatgga |
18543490 |
T |
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| Q |
390 |
cataattatgtgtggaaaggtgtatatgttcttgtccatagttatgttctagcaaattctaacaaaaattggtgtattnnnnnnnnntccatcaacaaaa |
489 |
Q |
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| T |
18543491 |
cataattatgtgtggaaaggtgtatatgttcttgtccataattatgttctagcaaattctaacaaaaattggtgtattcaagaaaaatccatcaacaaaa |
18543590 |
T |
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| Q |
490 |
gcacatgattgtaataatcatgtgttcgacaattgaatttcttctctct |
538 |
Q |
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| T |
18543591 |
gcacatgattgtaataatcatgtgttcgacaattgaatttcttctctct |
18543639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 276 - 535
Target Start/End: Original strand, 39937455 - 39937717
Alignment:
| Q |
276 |
aattgctagttaatttattgatttgatgaaaattaatggatatttatttagtcttgcccttaaaacaaaaccacacacaatgcatattctcaagttggag |
375 |
Q |
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| T |
39937455 |
aattgcgagttaattgattgattcgatgaaaattaatggatatttatttggtctcacccagaaaacaaaaccaaacactatgcatattctcaagttggag |
39937554 |
T |
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| Q |
376 |
aaaatagacatggacataattatgtgtggaaaggtgtatatgttcttgtccatagttatgttctagcaaattctaacaaaaattggtgtattnnnnnnnn |
475 |
Q |
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| T |
39937555 |
aagatagacatggacatgattatgtgtggaaagctgtgtatgttcttgtccataattatgttctagcaaattctaacaaaaattggtgtattcaaggaaa |
39937654 |
T |
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| Q |
476 |
ntccatcaacaaaagcacatgattgt---aataatcatgtgttcgacaattgaatttcttctc |
535 |
Q |
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| T |
39937655 |
atccatcaacaaaagcacatgattgtataaataatcatatgatcgacaattgaatttcttctc |
39937717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 39936491 - 39936604
Alignment:
| Q |
97 |
atatatagacattggccacaccatggtgaaattgaattaaaacgacggttgcttttttattgtgtttggaagtttaaattttcatttccgttagaccttt |
196 |
Q |
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| T |
39936491 |
atatatagacattggccacaccatggtgaaattgaatgaaaacgatggt-gcttttttattgtgtttagaggtttaaattttcatttccgttagaccgtt |
39936589 |
T |
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| Q |
197 |
gtcatatgatcagtg |
211 |
Q |
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| T |
39936590 |
gtcatatgattagtg |
39936604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 396
Target Start/End: Original strand, 34451220 - 34451323
Alignment:
| Q |
295 |
gatttgatgaaaattaatggatatttatttagtcttgcccttaaaacaaaaccacacac-aatgcatattctcaagttggagaaaa--tagacatggaca |
391 |
Q |
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| T |
34451220 |
gatttgatgaaaattcatggttatatattga-tcttgcccagaaaacaaaaccacacactaacacattttctcaagttggagaagaccgagacatggaca |
34451318 |
T |
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| Q |
392 |
taatt |
396 |
Q |
| |
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||||| |
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| T |
34451319 |
taatt |
34451323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 53275539 - 53275486
Alignment:
| Q |
295 |
gatttgatgaaaattaatggatatttatttagtcttgcccttaaaacaaaacca |
348 |
Q |
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| T |
53275539 |
gatttgatgaaaatttatggttatttatttggtcttgcccagaaaacaaaacca |
53275486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 10590775 - 10590831
Alignment:
| Q |
289 |
tttattgatttgatgaaaattaatggatatttatttagtcttgcccttaaaacaaaa |
345 |
Q |
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| T |
10590775 |
tttattgatttgaagaaaaataatggttacttgtttggtcttgcccataaaacaaaa |
10590831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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