View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_34 (Length: 543)
Name: NF1199_low_34
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 4117105 - 4117639
Alignment:
| Q |
1 |
tgaggatcaacttcactaggatcttctaaccagtcaccactttctagctcaggtagctcaaacaacacttctacatcaaccttaaagttcaaattggaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4117105 |
tgaggatcaacttcactaggatcttctaaccagtcaccactttctagctcaggtagctcaaacaacacttctacatcaaccttaaagttcaaattggaaa |
4117204 |
T |
|
| Q |
101 |
atgattatcattgatgatgtccat-ctcatnnnnnnnttcgataaaaatttggaaacatatgttgcagaaatttacttacctgtgacacattgatgcctg |
199 |
Q |
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|||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4117205 |
atgattatcattgatgatgtactttctcataaaaaaattcgataaaaatttggaaacatatgttgcagaaatttacttacctgtgacacattgattcctg |
4117304 |
T |
|
| Q |
200 |
agatttcaagagttgatccaccctcaagtttctctcctgtaatactgatttgtttgtgtcttagattttctatttcttcaattggccattgcatcaatct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4117305 |
agatttcaagagttgatccaccctcaagtttctctcctgtaatactgatttgtttgtgtcttagattttctatttcttcaattggccattgcatcaatct |
4117404 |
T |
|
| Q |
300 |
cttcccacttttatctagccaaactttccttggaattgtctacattaccaaacaagtttaatcatttactaatatgatacactttcacattgaccatatc |
399 |
Q |
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| T |
4117405 |
cttcccacttttatctagccaaactttccttggaattgtctacattaccaaacaagtttaatcatttactaatatgatacactttcacattgaccatata |
4117504 |
T |
|
| Q |
400 |
ttaaaactaaatatccaatctggtccttcaaaatgcaaaatattaataagatttgtcagtctgttaatacttgaaggaactataatgacattaagttggt |
499 |
Q |
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| T |
4117505 |
ttaaaactaaatatccaatctggtccttcaaaatgcaaaatattaataagatttgtcagtctgttaatacttgcaggaactataatgacattaagttggt |
4117604 |
T |
|
| Q |
500 |
aatgtccgagatgtatttgaaactaaaagaataat |
534 |
Q |
| |
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| T |
4117605 |
aatgtccgagatgtatttgaaactaaaagaataat |
4117639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 4128604 - 4128684
Alignment:
| Q |
265 |
ttttctatttcttcaattggccattgcatcaatctcttcccacttttatctagccaaactttccttggaattgtctacatt |
345 |
Q |
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||||||| |||||||||||||| ||||| ||||||| |||||||| ||| ||||||| ||||||||||| ||||||||| |
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| T |
4128604 |
ttttctaactcttcaattggccactgcattaatctctccccactttcatcaagccaaaacttccttggaatagtctacatt |
4128684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 345
Target Start/End: Original strand, 4137156 - 4137297
Alignment:
| Q |
204 |
ttcaagagttgatccaccctcaagtttctctcctgtaatactgatttgtttgtgtcttagattttctatttcttcaattggccattgcatcaatctcttc |
303 |
Q |
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||||||||||||||||| | ||| | ||||| || ||| ||||||||||| | || ||||||| |||||||||||||||||||| ||| |||| |
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| T |
4137156 |
ttcaagagttgatccactttggagtgtttctccggtgatattgatttgtttgccacgaagtttttctaactcttcaattggccattgcattaattgcttc |
4137255 |
T |
|
| Q |
304 |
ccacttttatctagccaaactttccttggaattgtctacatt |
345 |
Q |
| |
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||| | ||||| ||||| | ||||||||||||||||||||| |
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| T |
4137256 |
ccattcttatcaagccagaacttccttggaattgtctacatt |
4137297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 4142298 - 4142369
Alignment:
| Q |
274 |
tcttcaattggccattgcatcaatctcttcccacttttatctagccaaactttccttggaattgtctacatt |
345 |
Q |
| |
|
||||| |||||||| |||| |||| ||||||||||| ||| ||||||| ||||||||||||||||||||| |
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| T |
4142298 |
tcttcgattggccactgcagtaatcgcttcccactttcatcaagccaaaacttccttggaattgtctacatt |
4142369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 525
Target Start/End: Complemental strand, 16827384 - 16827337
Alignment:
| Q |
478 |
actataatgacattaagttggtaatgtccgagatgtatttgaaactaa |
525 |
Q |
| |
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|||| |||||||||||||| ||||| ||||||||| |||||||||||| |
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|
| T |
16827384 |
actagaatgacattaagtttgtaatctccgagatgaatttgaaactaa |
16827337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 4141906 - 4141951
Alignment:
| Q |
38 |
cactttctagctcaggtagctcaaacaacacttctacatcaacctt |
83 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||| |||||| |||| |
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| T |
4141906 |
cactttctagatcaggtagctcaaacaagacttccacatcagcctt |
4141951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 534
Target Start/End: Original strand, 32702695 - 32702745
Alignment:
| Q |
484 |
atgacattaagttggtaatgtccgagatgtatttgaaactaaaagaataat |
534 |
Q |
| |
|
|||||| ||||||||||||||| |||||| |||||||||||| |||||||| |
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| T |
32702695 |
atgacaataagttggtaatgtcggagatgcatttgaaactaagagaataat |
32702745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 534
Target Start/End: Original strand, 7145444 - 7145545
Alignment:
| Q |
433 |
tgcaaaatattaataagatttgtcagtctgttaatacttgaaggaactataatgacattaagttggtaatgtccgagatgtatttgaaactaaaagaata |
532 |
Q |
| |
|
|||||||| ||||| ||||||||| | |||| || ||| ||||||||||| |||| || ||||||||| || | || |||||||||||||| ||||| |
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| T |
7145444 |
tgcaaaatgttaattagatttgtccccccgttagtatttgcaggaactataacgacactatgttggtaatttcggggaggtatttgaaactaagtgaata |
7145543 |
T |
|
| Q |
533 |
at |
534 |
Q |
| |
|
|| |
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|
| T |
7145544 |
at |
7145545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 522
Target Start/End: Original strand, 36498089 - 36498169
Alignment:
| Q |
442 |
ttaataagatttgtcagtctgttaatacttgaaggaactataatgacattaagttggtaatgtccgagatgtatttgaaac |
522 |
Q |
| |
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||||||||||||||| |||||| || ||| ||| |||||||||||||| |||| ||||||| ||||| ||||||||| |
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| T |
36498089 |
ttaataagatttgtccatctgttggtatttgtagggactataatgacattgagtttgtaatgttgaagatgcatttgaaac |
36498169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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