View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_low_38 (Length: 530)
Name: NF1199_low_38
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_38 |
 | |
|
| [»] scaffold0713 (2 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold0438 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 15001712 - 15002134
Alignment:
| Q |
11 |
ataatatatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaa--catg |
108 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15001712 |
ataatacatgcaaccgaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaaaacatg |
15001811 |
T |
|
| Q |
109 |
agcatcattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15001812 |
agcatcattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaa |
15001911 |
T |
|
| Q |
209 |
aatatgcgataatgatcgttatcaactcatagttatggcgaatcaaccaaatttgctctgtcataactcccgaagcagcaatgaaagcaacaactatcag |
308 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15001912 |
aatatgtgataatgatcgttatcaactcatagtaatggcgaatcaaccaaatttgctctgtcagaactcccgacgcagcaatgaaagcaacaactatcag |
15002011 |
T |
|
| Q |
309 |
ctctagtgtttgttgagaaatcaaaacagttttgttggtttctagagatgaagaaacaacacccattatgcagaaagtacagcaacacctccattctcct |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002012 |
ctctagtgtttgttgagaaatcaaaacagttttgttggtttctagagatgaagaaacaacacccattatgcagaaagtacagcaacacctccattctcct |
15002111 |
T |
|
| Q |
409 |
aaccccttctaaatgaacgaaat |
431 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
15002112 |
aatcccttctaaatgaacgaaat |
15002134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 39155685 - 39155887
Alignment:
| Q |
42 |
catttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaagctcaaagggtg |
141 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| | |||||||| | |
|
|
| T |
39155685 |
catttgctcaataagtcatagataaatccaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagggcg |
39155784 |
T |
|
| Q |
142 |
tgttccccatttt-tataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatag |
240 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
39155785 |
tgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgttatcaactcacag |
39155884 |
T |
|
| Q |
241 |
tta |
243 |
Q |
| |
|
||| |
|
|
| T |
39155885 |
tta |
39155887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 809687 - 809925
Alignment:
| Q |
15 |
tatatgcaaccaaatctcaatttcaac-catttgcccaataaatcatagataaattcaaat-agataccataataatatcgatgactttaaacatgagca |
112 |
Q |
| |
|
|||||| ||||||||||| ||| ||| ||||||| |||||||||||||| || |||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
809687 |
tatatgtaaccaaatctcgattgcaaaacatttgctcaataaatcatagacaagttcaaaacagagaccataataatatcgatgactttaaacatgagca |
809786 |
T |
|
| Q |
113 |
tcattgagaagaaaaaagctcaaagggtgtgttccccatttt--tataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaa |
210 |
Q |
| |
|
||||||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
809787 |
tcattgataagaaaaa-gttcaaagggtgtgttccccatttttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaa |
809885 |
T |
|
| Q |
211 |
tatgcgataatgatcgttatcaactcatagttatggcgaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| |||| |
|
|
| T |
809886 |
tatgcgataatgatcgttatcaactcacagatatgacgaa |
809925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 252
Target Start/End: Complemental strand, 10414940 - 10414810
Alignment:
| Q |
122 |
agaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataat |
221 |
Q |
| |
|
||||||| | ||||| |||| |||||||| ||| ||||| ||||||||||| ||||| || |||||| |||||||| ||| |||||||| |||||||| |
|
|
| T |
10414940 |
agaaaaatgttcaaaaggtgcgttccccaatttgataaatactttaacatataaaatcataaaaatagcaataataacgatattgaaaataagcgataat |
10414841 |
T |
|
| Q |
222 |
gatcgttatcaactcatagttatggcgaatc |
252 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||| |
|
|
| T |
10414840 |
gatcgtcatcaactcacagttatgacgaatc |
10414810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 121 - 255
Target Start/End: Complemental strand, 2587291 - 2587157
Alignment:
| Q |
121 |
aagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataa |
220 |
Q |
| |
|
|||||||| | |||||||||||| | ||| |||| | ||| |||||||| || ||||| | |||||||||||||||| ||| | |||||| | ||||| |
|
|
| T |
2587291 |
aagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaacttataaaatcaccaaaatatcaataatagagataattaaaataagtgataa |
2587192 |
T |
|
| Q |
221 |
tgatcgttatcaactcatagttatggcgaatcaac |
255 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
2587191 |
tgatcgtcatcaactcacagttatgacgaatcaac |
2587157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 255
Target Start/End: Complemental strand, 4405118 - 4405004
Alignment:
| Q |
144 |
ttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtga---aaatatgcgataatgatcgttatcaactcatag |
240 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||| | ||||||||| |||||||| |||| || | ||||| |||||||||||||||||||||||| || |
|
|
| T |
4405118 |
ttccccattttagtaaatactttgacatagaaattaatcaaaataccaataataataattgtaattaaaataagcgataatgatcgttatcaactcacag |
4405019 |
T |
|
| Q |
241 |
ttatggcgaatcaac |
255 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
4405018 |
ttatgatgaatcaac |
4405004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 31713330 - 31713222
Alignment:
| Q |
135 |
aagggtgtgttccccatttttataaacacttt-aacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaa |
233 |
Q |
| |
|
||||||||||||||||||||| || | ||||| |||||| ||||| || ||||||||||||||| ||| |||||||| |||||||||||||| | ||| |
|
|
| T |
31713330 |
aagggtgtgttccccatttttgtagatacttttaacatataaaatcat-aaaatatcaataataacgatattgaaaataagcgataatgatcgtcaccaa |
31713232 |
T |
|
| Q |
234 |
ctcatagtta |
243 |
Q |
| |
|
|||| ||||| |
|
|
| T |
31713231 |
ctcacagtta |
31713222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 255
Target Start/End: Complemental strand, 44323216 - 44323000
Alignment:
| Q |
42 |
catttgcccaataaatcatagataaattcaaat-agataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaa--gctcaaagg |
138 |
Q |
| |
|
||||||| |||||||||||||| || |||||| ||| ||||||||||||| ||||| |||||||| | ||| || || |||||| | | ||| | |
|
|
| T |
44323216 |
catttgctcaataaatcatagacaagttcaaaacagagaccataataatattcatgaccttaaacatcaatttcaacgataaaaaaaaaatgtttaaaag |
44323117 |
T |
|
| Q |
139 |
gtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcat |
238 |
Q |
| |
|
||||| | ||| |||| | ||| |||||||| || ||||| | ||||||||||||||| ||| | |||||| | |||||||||||| ||||||||| |
|
|
| T |
44323116 |
gtgtgcttcccgttttgagaaatactttaacttataaaatcacaaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac |
44323017 |
T |
|
| Q |
239 |
agttatggcgaatcaac |
255 |
Q |
| |
|
||||| | ||||||||| |
|
|
| T |
44323016 |
agttacgacgaatcaac |
44323000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 20024520 - 20024568
Alignment:
| Q |
151 |
tttttataaacactttaacatagaaaattatcaaaatatcaataatatt |
199 |
Q |
| |
|
|||| ||||| ||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
20024520 |
ttttaataaatactttaacaaagaaaataatcaaaatatcaataatatt |
20024568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 44314914 - 44314821
Alignment:
| Q |
162 |
actttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatagttatggcgaatcaac |
255 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||| ||| | |||||| | |||||||||||| ||||||||| ||||| | ||||||||| |
|
|
| T |
44314914 |
actttaacttataaaatcacaaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacagttacgacgaatcaac |
44314821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 9821840 - 9821421
Alignment:
| Q |
11 |
ataatatatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
9821840 |
ataatatatgcaaccaaatctcaatttcaaccattggcccaacaaatcatagataaattcaaacaaagaccataataatatcgatgactttaaacatgag |
9821741 |
T |
|
| Q |
111 |
catcattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaa |
210 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9821740 |
catcattgaggagaaaaa-gttcaaagggtgtgttccccatttttataaacactttaacatataaaattatcaaaatatcaataatattaatagggaaaa |
9821642 |
T |
|
| Q |
211 |
tatgcgataatgatcgttatcaactcatagttatggcgaatcaaccaaatttgctctgtcataactcccgaagcagcaatgaaagcaacaactatcagct |
310 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9821641 |
tatgcgataatgatcgttatcaactcacagttatggcgaatcaaccaaatttgctttgtcagaactcccgaagcagcaatgaaaacaacaactatcagct |
9821542 |
T |
|
| Q |
311 |
ctagtgtttgttgagaaatcaaaacagttttgttggtttctagagatgaagaaacaacacccattatgcagaaagtacagcaacacctccattctcctaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9821541 |
ctagtgtttgttgagaaatcaaaacagttttgttggtttctagagatgaagaaacaacacccattatgaagaaagtacagcaacacctccattctcctaa |
9821442 |
T |
|
| Q |
411 |
ccccttctaaatgaacgaaat |
431 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
9821441 |
cctcttctaaatgaacgaaat |
9821421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 25479270 - 25479450
Alignment:
| Q |
11 |
ataatatatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
25479270 |
ataatatatgcaaccaaatctcaatttcaaccattggcccaacaaatcgtagataaattcaaacaaaaaccataataatatcgatgactttaaacatgag |
25479369 |
T |
|
| Q |
111 |
catcattgagaagaaaaaagctcaaagggtgtgttcccca-tttttataaacactttaacatagaaaattatcaaaatatcaa |
192 |
Q |
| |
|
|| |||||||||| |||||| |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25479370 |
caacattgagaag-aaaaagttcaatgggtgtgttccccattttttataaaca-tttaacatagaaaattatcaaaatatcaa |
25479450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 33062210 - 33062070
Alignment:
| Q |
11 |
ataatatatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgag |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33062210 |
ataatatatgcaactaaatctcaatttcaaccattggcccaacaaatcatagataaattcaaacagagaccataataatatcgatgactttaaacatgag |
33062111 |
T |
|
| Q |
111 |
catcattgagaagaaaaaagctcaaagggtgtgttccccatt |
152 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
33062110 |
catcattgagaaga-aaaagttcaaagggtgtgttccccatt |
33062070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 28039874 - 28039676
Alignment:
| Q |
36 |
ttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagcat-cattgagaagaaaaaagctca |
134 |
Q |
| |
|
||||| ||||| | |||||||||||||| || ||||| |||| |||||| |||||| ||||| |||||||| | | || || |||||||| | ||| |
|
|
| T |
28039874 |
ttcaaacatttcctcaataaatcatagacaagttcaactagacaccatattaatattcatgacattaaacataaattttcaaggacaagaaaaatgttca |
28039775 |
T |
|
| Q |
135 |
aagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaac |
234 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
28039774 |
aagc-tgtgttctccatttttataaacactttaacatagaaaat---caaaatatcaataatattaatagtaaaaatatgtgataatgatcgttatcaac |
28039679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 135 - 255
Target Start/End: Original strand, 13142955 - 13143075
Alignment:
| Q |
135 |
aagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaac |
234 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||||||| ||||| || ||||||||||||||| ||| |||||||| |||||||||||||| |||||| |
|
|
| T |
13142955 |
aagggtgtgttccctatttttgtaaatactttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcgataatgatcgtcatcaac |
13143054 |
T |
|
| Q |
235 |
tcatagttatggcgaatcaac |
255 |
Q |
| |
|
||| |||| | ||||||||| |
|
|
| T |
13143055 |
tcactgttacgacgaatcaac |
13143075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 42 - 255
Target Start/End: Complemental strand, 22013108 - 22012894
Alignment:
| Q |
42 |
catttgcccaataaatcatagataaattcaaat-agataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaagctcaaagggt |
140 |
Q |
| |
|
||||||| |||||||||||||| || |||||| ||| ||||||||||||| ||||| |||||||| | ||| || |||||||| | ||||||||| |
|
|
| T |
22013108 |
catttgctcaataaatcatagacaagttcaaaacagagaccataataatattcatgaccttaaacatcaatttcaacgataagaaaaatgttcaaagggt |
22013009 |
T |
|
| Q |
141 |
gtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatag |
240 |
Q |
| |
|
||| | ||| |||| | ||| |||||||| || ||||| | ||||||||||||||| ||| | |||||| | |||||||||||| ||||||||| || |
|
|
| T |
22013008 |
gtgcttcccgttttgagaaatactttaacttataaaatcacaaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacag |
22012909 |
T |
|
| Q |
241 |
ttatggcgaatcaac |
255 |
Q |
| |
|
||| | ||||||||| |
|
|
| T |
22012908 |
ttacgacgaatcaac |
22012894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 17354867 - 17354758
Alignment:
| Q |
135 |
aagggtgtgttccccatttttataaacacttt-aacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaa |
233 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||||| ||||| || ||||||||||||||| ||| |||||||| || ||||||||||| ||||| |
|
|
| T |
17354867 |
aagggtgtgttccccatttttgtaaatacttttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtaatcaa |
17354768 |
T |
|
| Q |
234 |
ctcatagtta |
243 |
Q |
| |
|
|||| ||||| |
|
|
| T |
17354767 |
ctcacagtta |
17354758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 27683481 - 27683378
Alignment:
| Q |
135 |
aagggtgtgttccccatttttataaacacttt-aacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaa |
233 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||||| ||||| || ||||||||||||||| ||| |||||||| || ||||||||||| ||||| |
|
|
| T |
27683481 |
aagggtgtgttccccatttttgtaaatacttttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtcatcaa |
27683382 |
T |
|
| Q |
234 |
ctca |
237 |
Q |
| |
|
|||| |
|
|
| T |
27683381 |
ctca |
27683378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 27690802 - 27690699
Alignment:
| Q |
135 |
aagggtgtgttccccatttttataaacacttt-aacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaa |
233 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||||| ||||| || ||||||||||||||| ||| |||||||| || ||||||||||| ||||| |
|
|
| T |
27690802 |
aagggtgtgttccccatttttgtaaatacttttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtcatcaa |
27690703 |
T |
|
| Q |
234 |
ctca |
237 |
Q |
| |
|
|||| |
|
|
| T |
27690702 |
ctca |
27690699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 243
Target Start/End: Complemental strand, 27526389 - 27526185
Alignment:
| Q |
42 |
catttgcccaataaatcatagataaattcaaat-agataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaa--gctcaaagg |
138 |
Q |
| |
|
||||||| |||||||||||||| || |||||| ||| ||||||||||||| ||||| |||||||| | ||| || || |||||| | | ||| | |
|
|
| T |
27526389 |
catttgctcaataaatcatagacaagttcaaaacagagaccataataatattcatgaccttaaacatcaatttcaacgataaaaaaaaaatgtttaaaag |
27526290 |
T |
|
| Q |
139 |
gtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcat |
238 |
Q |
| |
|
||||| | ||| |||| | ||| |||||||| || ||||||| |||||||||||||||| ||| | |||||| | |||||||||||| ||||||||| |
|
|
| T |
27526289 |
gtgtgcttcccgttttgagaaatactttaacttataaaattaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac |
27526190 |
T |
|
| Q |
239 |
agtta |
243 |
Q |
| |
|
||||| |
|
|
| T |
27526189 |
agtta |
27526185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 27650112 - 27650048
Alignment:
| Q |
133 |
caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataata |
197 |
Q |
| |
|
||||||||||| | |||||||| |||| |||||||| || ||||||| |||||||||||||||| |
|
|
| T |
27650112 |
caaagggtgtgcttcccattttggtaaatactttaacttataaaattaccaaaatatcaataata |
27650048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 4285 - 4042
Alignment:
| Q |
11 |
ataatatatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4285 |
ataatatatgcaaccaaatctcaatttcaaccattggcccaacatatcatagataaattcaaacagagaccataataatatcgatgactttaaacatgag |
4186 |
T |
|
| Q |
111 |
catcattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaa |
210 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4185 |
catcattgagaagaaaaa-gttcaaagggtgtgttccccatttttataaaaactttaacatagaaaattatcaaaatatcaataatattaatagggaaaa |
4087 |
T |
|
| Q |
211 |
tatgcgataatgatcgttatcaactcatagttatggcgaatcaac |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
4086 |
tatgcgataatgatcgttatcaactcatagttacgacgaatcaac |
4042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 149 - 1
Alignment:
| Q |
11 |
ataatatatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
149 |
ataatatatgcaaccaaatctcaatttcaaccattggcccaacatatcatagataaattcaaacagagaccataataatatcgatgactttaaacatgag |
50 |
T |
|
| Q |
111 |
catcattgagaagaaaaaagctcaaagggtgtgttccccatttttataaa |
160 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49 |
catcattgagaaga-aaaagttcaaagggtgtgttccccatttttataaa |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 17654378 - 17654621
Alignment:
| Q |
11 |
ataatatatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17654378 |
ataatatatgcaaccaaatctcaatttcaaccattggcccaacaaatcatagataaattcaaccagagaccataataatatcgatgactttaaacatgag |
17654477 |
T |
|
| Q |
111 |
catcattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaa |
210 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17654478 |
catcattgagaagaaaaa-gttcaaagggtgtgttccccatttttataaaaactttaacatagaaaattatcaaaatatcaataatattaatagggaaaa |
17654576 |
T |
|
| Q |
211 |
tatgcgataatgatcgttatcaactcatagttatggcgaatcaac |
255 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
17654577 |
tatgcgataatgatcgttatcaactcacagttacgacgaatcaac |
17654621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 42 - 250
Target Start/End: Original strand, 47051571 - 47051779
Alignment:
| Q |
42 |
catttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaagctcaaagggtg |
141 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| | |||||||||| |
|
|
| T |
47051571 |
catttgctcaataagtcatagataaattcaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagggtg |
47051670 |
T |
|
| Q |
142 |
tgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatagt |
241 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
47051671 |
tgttccccattttataaaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatatgataatgatcgttatcaactcacaga |
47051770 |
T |
|
| Q |
242 |
tatggcgaa |
250 |
Q |
| |
|
|||| |||| |
|
|
| T |
47051771 |
tatgacgaa |
47051779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 16099893 - 16099746
Alignment:
| Q |
50 |
caataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaa--gctcaaagggtgtgttcc |
147 |
Q |
| |
|
|||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||| ||||||||||||| | |||||||||||||||| |
|
|
| T |
16099893 |
caataagtcatagataaatccaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaaaatgttcaaagggtgtgttcc |
16099794 |
T |
|
| Q |
148 |
ccatttttataaacactttaacatagaaaattatcaaaatatcaataa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16099793 |
ccatttttataaacactttaacatagaaaattatcaaaatatcaataa |
16099746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 252
Target Start/End: Original strand, 29290138 - 29290268
Alignment:
| Q |
122 |
agaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataat |
221 |
Q |
| |
|
||||||| | ||||| ||||||||||||| ||| ||||| ||||||| ||| ||||| || |||||| |||||||| ||| |||||||| |||||||| |
|
|
| T |
29290138 |
agaaaaatgttcaaaaggtgtgttccccaatttgataaatactttaaaatataaaatcataaaaatagcaataataacgatattgaaaataagcgataat |
29290237 |
T |
|
| Q |
222 |
gatcgttatcaactcatagttatggcgaatc |
252 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||| |
|
|
| T |
29290238 |
gatcgtcatcaactcacagttatgacgaatc |
29290268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 42 - 255
Target Start/End: Complemental strand, 14649429 - 14649211
Alignment:
| Q |
42 |
catttgcccaataaatcatagataaattcaaat-agataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaa----gctcaaa |
136 |
Q |
| |
|
||||||| |||||||||||||| || |||||| ||| ||||||||||||| ||||| |||||||| | ||| || || |||||| | ||||| |
|
|
| T |
14649429 |
catttgctcaataaatcatagacaagttcaaaacagagaccataataatattcatgaccttaaacatcaatttcaacgataaaaaaaaaaaatgttcaaa |
14649330 |
T |
|
| Q |
137 |
gggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactc |
236 |
Q |
| |
|
||||||| | |||||||| | ||| |||||||| || ||||| | |||||||||||||||| ||| | |||||| | |||||||||||| |||||||| |
|
|
| T |
14649329 |
gggtgtgcttcccattttgagaaatactttaacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactc |
14649230 |
T |
|
| Q |
237 |
atagttatggcgaatcaac |
255 |
Q |
| |
|
| ||||| | ||||||||| |
|
|
| T |
14649229 |
acagttacgacgaatcaac |
14649211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 42 - 255
Target Start/End: Complemental strand, 14659219 - 14659001
Alignment:
| Q |
42 |
catttgcccaataaatcatagataaattcaaat-agataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaa----gctcaaa |
136 |
Q |
| |
|
||||||| |||||||||||||| || |||||| ||| ||||||||||||| ||||| |||||||| | ||| || || |||||| | ||||| |
|
|
| T |
14659219 |
catttgctcaataaatcatagacaagttcaaaacagagaccataataatattcatgaccttaaacatcaatttcaacgataaaaaaaaaaaatgttcaaa |
14659120 |
T |
|
| Q |
137 |
gggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactc |
236 |
Q |
| |
|
||||||| | |||||||| | ||| |||||||| || ||||| | |||||||||||||||| ||| | |||||| | |||||||||||| |||||||| |
|
|
| T |
14659119 |
gggtgtgcttcccattttgagaaatactttaacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactc |
14659020 |
T |
|
| Q |
237 |
atagttatggcgaatcaac |
255 |
Q |
| |
|
| ||||| | ||||||||| |
|
|
| T |
14659019 |
acagttacgacgaatcaac |
14659001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 42565288 - 42565065
Alignment:
| Q |
15 |
tatatgcaaccaaatctcaatttcaac-catttgcccaataaatcatagataaattcaaat-agataccataataatatcgatgactttaaacatgagca |
112 |
Q |
| |
|
|||||| ||||||||||| ||| ||| ||||||| |||||||||||||| || |||||| ||| ||||||||||| | ||||| |||||||| | |
|
|
| T |
42565288 |
tatatgtaaccaaatctcgattgcaaaacatttgctcaataaatcatagacaagttcaaaacagagaccataataattttcatgaccttaaacatcaatt |
42565189 |
T |
|
| Q |
113 |
tcattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaata |
212 |
Q |
| |
|
||| || |||||||| | |||||||||||| | ||||||| | ||| |||||||| || ||||| | ||||||| |||||||| ||| | |||||| |
|
|
| T |
42565188 |
tcaacgataagaaaaatgttcaaagggtgtgctttccattttgagaaatactttaacttataaaatcaccaaaataccaataatagcgataattaaaata |
42565089 |
T |
|
| Q |
213 |
tgcgataatgatcgttatcaactc |
236 |
Q |
| |
|
| |||||| ||||| |||||||| |
|
|
| T |
42565088 |
agtgataataatcgtcatcaactc |
42565065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 2835 - 2589
Alignment:
| Q |
11 |
ataatatatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
2835 |
ataatatatgcaaccaaatctcaatttcaaccattggcccaacaaatcatagataaattcaaacagagaacataataatatcgatgactttaaacatgag |
2736 |
T |
|
| Q |
111 |
catcattgagaagaaaaaagctcaaagggtgtgttcccca---tttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtga |
207 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2735 |
catcattgagaaga-aaaagttcaaagggtgtgttccccattttttttataaacactttaacatagaaaattatcaaaatatcaataatattaataggga |
2637 |
T |
|
| Q |
208 |
aaatatgcgataatgatcgttatcaactcatagttatggcgaatcaac |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
2636 |
aaatatgcgataatgatcgttatcaactcacagttatgacgaatcaac |
2589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 9e-96; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 6912341 - 6912586
Alignment:
| Q |
13 |
aatatatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagca |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6912341 |
aatatatgcatccaaatctcaatttcaaacattggcccaacaaatcatagataaattcaaacagagaccataataatatcgatgactttaaacatgagca |
6912440 |
T |
|
| Q |
113 |
tcattgagaagaaaaaagctcaaagggtgtgttcccca----tttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaa |
208 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
6912441 |
tcattgagaag-aaaaagttcaaagggtgtgttccccatttttttttataaacactttaacatagaaaattataaaaatatcaataatattaatagggaa |
6912539 |
T |
|
| Q |
209 |
aatatgcgataatgatcgttatcaactcatagttatggcgaatcaac |
255 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
6912540 |
aatatgcgataatgatcgttatcaactcacagttatgacgaatcaac |
6912586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 42 - 267
Target Start/End: Complemental strand, 19434141 - 19433916
Alignment:
| Q |
42 |
catttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaagctcaaagggtg |
141 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| | |||||||| |
|
|
| T |
19434141 |
catttgctcaataagtcatagataaattcaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagggca |
19434042 |
T |
|
| Q |
142 |
tgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatagt |
241 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| |
|
|
| T |
19434041 |
tgttccccatttttataaacactttaagatagaaaattatcaaaatatcaataatattaatagtaaaaatatgtgataatgatcgttatcaactcacagt |
19433942 |
T |
|
| Q |
242 |
tatggcgaatcaaccaaatttgctct |
267 |
Q |
| |
|
|||||| |||||| |||| |||||| |
|
|
| T |
19433941 |
tatggcacatcaactaaatctgctct |
19433916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 9436986 - 9437088
Alignment:
| Q |
135 |
aagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaac |
234 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||||||| ||||| || ||| ||||||||||| | ||| |||||||| | ||||||||||| |||||| |
|
|
| T |
9436986 |
aagggtgtgttccaaattttggtaaatactttaacatataaaatcataaaattatcaataataatgataatgaaaataagtgataatgatcgccatcaac |
9437085 |
T |
|
| Q |
235 |
tca |
237 |
Q |
| |
|
||| |
|
|
| T |
9437086 |
tca |
9437088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 5706673 - 5706737
Alignment:
| Q |
134 |
aaagggtgtgttccccattttt-ataaacactttaacatagaaaattatcaaaatatcaataata |
197 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| || ||||| | |||||||||||||||| |
|
|
| T |
5706673 |
aaagggtgtgttccccattttttataaatactttaacttataaaataaccaaaatatcaataata |
5706737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 28059410 - 28059526
Alignment:
| Q |
121 |
aagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataa |
220 |
Q |
| |
|
|||||||| | |||||||||||| | ||| |||| | ||| ||||||| || ||||| | |||||||||||||||| ||| | |||||| | ||||| |
|
|
| T |
28059410 |
aagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaaattataaaatcaccaaaatatcaataatagcgataattaaaataagtgataa |
28059509 |
T |
|
| Q |
221 |
tgatcgttatcaactca |
237 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
28059510 |
tgatcgtcatcaactca |
28059526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 28069835 - 28069951
Alignment:
| Q |
121 |
aagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataa |
220 |
Q |
| |
|
|||||||| | |||||||||||| | ||| |||| | ||| ||||||| || ||||| | |||||||||||||||| ||| | |||||| | ||||| |
|
|
| T |
28069835 |
aagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaaattataaaatcaccaaaatatcaataatagcgataattaaaataagtgataa |
28069934 |
T |
|
| Q |
221 |
tgatcgttatcaactca |
237 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
28069935 |
tgatcgtcatcaactca |
28069951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 4707495 - 4707732
Alignment:
| Q |
11 |
ataatatatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgag |
110 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
4707495 |
ataatatatgcaaccaaatctcaatat-aaccattggcccaaccaatcatagataaattcaaacagagaccataataacatcgatgactttaaacatgag |
4707593 |
T |
|
| Q |
111 |
catcattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaa |
210 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
4707594 |
catcattgagaagaaaaa-gttcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaagtatcaataatattaatagggaaaa |
4707692 |
T |
|
| Q |
211 |
tatgcgataatgatcgttatcaactcatagttatggcgaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| |||| |
|
|
| T |
4707693 |
tatgcgataatgatcgttatcaactcacagatatgacgaa |
4707732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 15998700 - 15998595
Alignment:
| Q |
162 |
actttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatagttatggcgaatcaaccaaatt |
261 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| | || || |
|
|
| T |
15998700 |
acttttacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcagtgttatgacgaatcagctaagtt |
15998601 |
T |
|
| Q |
262 |
tgctct |
267 |
Q |
| |
|
|||||| |
|
|
| T |
15998600 |
tgctct |
15998595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 26341442 - 26341603
Alignment:
| Q |
15 |
tatatgcaaccaaatctcaatttcaac-catttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagcat |
113 |
Q |
| |
|
||||||| | |||||||||||| ||| ||||||| |||||| ||||||||| | | |||||| ||| ||||| ||| ||||||||||||||| | || |
|
|
| T |
26341442 |
tatatgccatcaaatctcaattacaaatcatttgctcaataagccatagataattcctaatagagaccgtaatagtattgatgactttaaacataaatat |
26341541 |
T |
|
| Q |
114 |
cattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaa |
177 |
Q |
| |
|
|| ||| ||| |||| | |||||||||||||| |||||||| |||||||||||| |||| |||| |
|
|
| T |
26341542 |
caatgacaag-aaaatgttcaaagggtgtgtt-cccattttaataaacactttagcataaaaaa |
26341603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 267
Target Start/End: Complemental strand, 18981558 - 18981332
Alignment:
| Q |
42 |
catttgcccaataaatcatagataaattcaaat-agataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaagctcaaagggt |
140 |
Q |
| |
|
||||||| |||||||||| ||| || |||||| ||| ||||||||||||| ||||| |||||||| | ||| || ||||||| | ||||||||| |
|
|
| T |
18981558 |
catttgctcaataaatcacagacaagttcaaaacagagaccataataatattcatgaccttaaacatcaatttcaacgatgagaaaaatgttcaaagggt |
18981459 |
T |
|
| Q |
141 |
gtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatag |
240 |
Q |
| |
|
||| | ||| |||| | ||| |||||||| || ||||| | |||||||||||||||| ||| | |||||| | |||||||||| | ||||||||| | |
|
|
| T |
18981458 |
gtgcttcccgttttgagaaatactttaacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcatcatcaactcacat |
18981359 |
T |
|
| Q |
241 |
ttatggcgaatcaaccaaatttgctct |
267 |
Q |
| |
|
|||| ||||||||||| |||| |||| |
|
|
| T |
18981358 |
ctatgtcgaatcaaccacattttctct |
18981332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 15256708 - 15256673
Alignment:
| Q |
162 |
actttaacatagaaaattatcaaaatatcaataata |
197 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15256708 |
actttaacatataaaattatcaaaatatcaataata |
15256673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 18695172 - 18695431
Alignment:
| Q |
11 |
ataatatatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgag |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
18695172 |
ataatatatgcagccaaatctcaatttcaaccattggcccaacaaatcatagataaattcaaacagagaccataataatatcgatgactttaaacacgag |
18695271 |
T |
|
| Q |
111 |
catcattgagaagaaaaaagctcaaagggtgtgttcccca----tttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtg |
206 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18695272 |
catcattgataag-aaaaagttcaaagggtgtgttccccatttttttttataaacactttaacatagaaaattatcaaaatatcaataatattaataggg |
18695370 |
T |
|
| Q |
207 |
aaaatatgcgataatgatcgttatcaactcatagttatggcgaatcaaccaaatttgctct |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| |||||| | ||||||||||| |
|
|
| T |
18695371 |
aaaatatgcgataatgatcgttatcaactcaccgatatgacgaatcgattaaatttgctct |
18695431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 42 - 237
Target Start/End: Original strand, 27562184 - 27562380
Alignment:
| Q |
42 |
catttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaagctcaaagggtg |
141 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| | |||||||| | |
|
|
| T |
27562184 |
catttgctcaataagtcatagataaatccaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagggcg |
27562283 |
T |
|
| Q |
142 |
tgttccccatttt-tataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactca |
237 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27562284 |
tgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgttatcaactca |
27562380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 4764498 - 4764666
Alignment:
| Q |
13 |
aatatatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagca |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4764498 |
aatatatgcatccaaatctcaatttcaaacattggcccaacaaatcatagataaattcaaacagagaccataataatatcgatgactttaaacatgagca |
4764597 |
T |
|
| Q |
113 |
tcattgagaagaaaaaagctcaaagggtgtgttcccca--tttttataaacactttaacatagaaaatta |
180 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4764598 |
tcattgagaag-aaaaagttcaaagggtgtgttccccatttttttataaacactttaacatagaaaatta |
4764666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 50 - 242
Target Start/End: Original strand, 54352860 - 54353050
Alignment:
| Q |
50 |
caataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaagctcaaagggtgtgttcccc |
149 |
Q |
| |
|
|||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| | ||||||| ||||||||| |
|
|
| T |
54352860 |
caataagtcatagataaatccaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagg--gtgttcccc |
54352957 |
T |
|
| Q |
150 |
atttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatagtt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||| ||| | |||||| | |||||||||||| ||||||||| |||| |
|
|
| T |
54352958 |
atttttataaacactttaacatagaaaatcaccaaaatatcaataatagctataattaaaataagtgataatgatcgtcatcaactcacagtt |
54353050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 4764663 - 4764721
Alignment:
| Q |
197 |
attaatagtgaaaatatgcgataatgatcgttatcaactcatagttatggcgaatcaac |
255 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
4764663 |
attaatagggaaaatatgcgataatgatcgttatcaactcacagttatgatgaatcaac |
4764721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 5359631 - 5359811
Alignment:
| Q |
15 |
tatatgcaaccaaatctcaatttc-aaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagcat |
113 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||| |||||||||||||| || |||||||||| ||||| | || ||||| ||| |||| | | |
|
|
| T |
5359631 |
tatatgcaaccaaatctcaatttcaaaacctttgctcaataaatcatagacaagttcaaatagagaccat----agattcatgaccttatacataaattt |
5359726 |
T |
|
| Q |
114 |
cattgagaagaaaaaagctc-aaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataata |
197 |
Q |
| |
|
|| ||| |||||||| | || |||||||||| | ||| |||| ||||| |||||||| || ||||| ||||||||| |||||||| |
|
|
| T |
5359727 |
caatgacaagaaaaatgttcaaaagggtgtgcttcccgttttgataaatactttaacttataaaatcatcaaaataacaataata |
5359811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 50 - 267
Target Start/End: Original strand, 5520475 - 5520690
Alignment:
| Q |
50 |
caataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaagctcaaagggtgtgttcccc |
149 |
Q |
| |
|
|||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||| ||||| |||||| | ||||||||||| ||||| |
|
|
| T |
5520475 |
caataagtcatagataaatccaaatagagaccataataatatcgatgactttaaacataagtatcaatgagaggaaaaatgttcaaagggtgt--tcccc |
5520572 |
T |
|
| Q |
150 |
atttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatagttatggcga |
249 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||||||||| ||| | |||||| | |||||||||||| ||||||||| ||||||| || |
|
|
| T |
5520573 |
atttttataaacactttaacatacaaaatcaccaaaatatcaataatagctataattaaaataagtgataatgatcgtcatcaactcacagttatgatga |
5520672 |
T |
|
| Q |
250 |
atcaaccaaatttgctct |
267 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
5520673 |
atcaactaagtttgctct |
5520690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 15597814 - 15597562
Alignment:
| Q |
15 |
tatatgcaaccaaatctcaatttcaacca-tttgcccaataaatcatagata-aattcaaatagataccataataatatcgatgactttaaacatgagca |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| ||||| |||| |||||| |||||||||||||| |||||| | ||||| || | |
|
|
| T |
15597814 |
tatatgcaaccaaatctcaatttcaaattctttgctcaataaatcaaagatataatt--aatagagaccataataatatcaatgactgttaacataagta |
15597717 |
T |
|
| Q |
113 |
tcattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaata |
212 |
Q |
| |
|
||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||| ||||||| ||| |||||||| |
|
|
| T |
15597716 |
tcaatgagaggaaaaatcttcaaagggtgtgttccccatttttataaatactttaacatataaaatcataaaaatattaataataaagataatgaaaata |
15597617 |
T |
|
| Q |
213 |
tgcgataatgatcgttatcaactcatagttatggcgaatcaaccaaatttgctct |
267 |
Q |
| |
|
| |||||||||||| ||||||||| | ||| ||||||||||| |||| |||| |
|
|
| T |
15597616 |
agtgataatgatcgtcatcaactcactgcaatgtcgaatcaaccacattttctct |
15597562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 250
Target Start/End: Complemental strand, 42784646 - 42784437
Alignment:
| Q |
42 |
catttgcccaataaatcatagataaattcaaat-agataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaagctcaaagggt |
140 |
Q |
| |
|
||||||| |||||||||||||| || |||||| ||| ||||||||||||| ||||| |||||||| | ||| || |||||||| | ||||||||| |
|
|
| T |
42784646 |
catttgctcaataaatcatagacaagttcaaaacagagaccataataatattcatgaccttaaacatcaatttcaacgataagaaaaatgttcaaagggt |
42784547 |
T |
|
| Q |
141 |
gtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatag |
240 |
Q |
| |
|
||| | ||| |||| | ||| |||||||| || ||||| | |||||||||||||||| ||| | |||||| | |||||||||||| ||||||||| || |
|
|
| T |
42784546 |
gtgcttcccgttttgagaaatactttaacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacag |
42784447 |
T |
|
| Q |
241 |
ttatggcgaa |
250 |
Q |
| |
|
|||| |||| |
|
|
| T |
42784446 |
atatgacgaa |
42784437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 27199359 - 27199449
Alignment:
| Q |
17 |
tatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacat |
107 |
Q |
| |
|
||||||||||||| | || ||||| ||||||| |||||||||||| | || ||||| |||| |||||| |||||| ||||| |||||||| |
|
|
| T |
27199359 |
tatgcaaccaaattttaacttcaaacatttgctcaataaatcatatacaagttcaactagacaccatattaatattcatgacattaaacat |
27199449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 28802757 - 28802505
Alignment:
| Q |
15 |
tatatgcaaccaaatctcaatttcaac-catttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagcat |
113 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| |||||| || ||||||| ||||||| ||||| |||||||| |||||||| | ||| || || |
|
|
| T |
28802757 |
tatatgcagccaaatctcaatttcaaatcatttgctcaataag-caaggataaatctaaatagagaccatgataatatcaatgacttttaccataagtat |
28802659 |
T |
|
| Q |
114 |
cattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatat |
213 |
Q |
| |
|
|| ||||| || ||| | |||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| ||| ||||||||| |
|
|
| T |
28802658 |
caatgagaggagaaatgttcaaagagtgtgttccccatttttataaacactttaacatataaaatcataaaaatatcaataataacgataatgaaaatat |
28802559 |
T |
|
| Q |
214 |
gcgataatgatcgttatcaactcatagttatggcgaatcaaccaaatttgctct |
267 |
Q |
| |
|
| |||||||||||| ||||||||| |||||| ||||||| | || |||||||| |
|
|
| T |
28802558 |
gtgataatgatcgtcatcaactcactgttatgacgaatcagctaagtttgctct |
28802505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 168 - 417
Target Start/End: Original strand, 44061019 - 44061270
Alignment:
| Q |
168 |
acatagaaaattatcaaaatatcaataatatt---aatagtgaaaatatgcgataatgatcgttatcaactcatagttatggcgaatcaaccaaatttgc |
264 |
Q |
| |
|
||||||||||| ||||||| | |||||||| | |||| | |||||| |||||| ||||||||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
44061019 |
acatagaaaataatcaaaacaccaataataatgataataattaaaataagcgatagtgatcgttatcaactcacagttatgatgaatcaaccaagtttgt |
44061118 |
T |
|
| Q |
265 |
tctgtcataactcccgaagcagcaatgaaagcaacaactatcagctctagtgtttgttgagaaatcaaaacagttttgttggtttctagagatgaagaaa |
364 |
Q |
| |
|
| ||| |||||||||||| |||| |||||||||||||||||||||||||||| ||||| |||| ||||| | |||||||| |||| || |||||||| |
|
|
| T |
44061119 |
tatgtaccaactcccgaagccgcaactaaagcaacaactatcagctctagtgtttattgaggaatc-aaacaatcttgttggtgtctacaggtgaagaaa |
44061217 |
T |
|
| Q |
365 |
caacacccattatgcagaaagtacagcaacacctccattctcctaaccccttc |
417 |
Q |
| |
|
||||| ||| |||||||| ||||||||||| ||| ||||| ||| |||||| |
|
|
| T |
44061218 |
gaacactgattctgcagaaaatacagcaacacttcccttctcataaacccttc |
44061270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 29469349 - 29469551
Alignment:
| Q |
13 |
aatatatgcaaccaaatctcaatttcaaccatttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagca |
112 |
Q |
| |
|
|||| |||||| ||||| |||||||||| |||| ||||||||||||||| ||| |||||||| |||||| |||| | |||||||||||| | || | |
|
|
| T |
29469349 |
aatacatgcaatcaaatttcaatttcaaa---ttgctcaataaatcatagatgaatccaaatagagaccatattaattttgatgactttaaatgtaagta |
29469445 |
T |
|
| Q |
113 |
tcattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaata |
212 |
Q |
| |
|
||| ||| ||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
29469446 |
tcaatgacaagaaaatat-tgaaagggtgtgttccccatttttataaacactttaacatagaaaat--------aatcaataatattaatagtgaagata |
29469536 |
T |
|
| Q |
213 |
tgcgataatgatcgt |
227 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
29469537 |
tgtgataatgatcgt |
29469551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 36265458 - 36265628
Alignment:
| Q |
65 |
aaattcaaatagataccataataatatcgatgactttaaacatgagcatcattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacact |
164 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||| ||||| || ||||||| || || | ||||| |||||||||| |||| ||| |
|
|
| T |
36265458 |
aaattcaaatagagaccataataatattaatgactttaaacatg--catcaaagacgagaaaaatattcgaaagatgtgtcccccatttttgtaaatact |
36265555 |
T |
|
| Q |
165 |
ttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactca |
237 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||| ||| ||||||| | |||||||||| | ||||||||| |
|
|
| T |
36265556 |
ttaacatataaaatcataaaaatatcaataataacgataaggaaaataagtgataatgatcctcatcaactca |
36265628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 30943406 - 30943343
Alignment:
| Q |
182 |
caaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatagttatg |
245 |
Q |
| |
|
|||||||||||||||| |||| | ||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
30943406 |
caaaatatcaataataacaataattaaaatatatgataatgattgttatcaactcataattatg |
30943343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 8621 - 8819
Alignment:
| Q |
15 |
tatatgcaaccaaatctcaatttcaac-catttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagcat |
113 |
Q |
| |
|
||||||| | |||||||||||| ||| ||||||| |||||| ||||||||| | | |||||| ||||||||| ||| ||||||||||||||| | || |
|
|
| T |
8621 |
tatatgccatcaaatctcaattacaaatcatttgctcaataagccatagataattcctaatagagaccataatagtattgatgactttaaacataaatat |
8720 |
T |
|
| Q |
114 |
cattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaa----attatcaaaatatcaataatattaatagtgaaa |
209 |
Q |
| |
|
|| ||| ||| |||| | |||||||||||||| || ||||| |||||||||||| ||| ||| || | ||||||||||| |||||||||||||||| |
|
|
| T |
8721 |
caatgacaag-aaaatgttcaaagggtgtgtt-cctattttaataaacactttagtataaaaaaaagataaccaaaatatcaacaatattaatagtgaaa |
8818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 11603 - 11764
Alignment:
| Q |
15 |
tatatgcaaccaaatctcaatttcaac-catttgcccaataaatcatagataaattcaaatagataccataataatatcgatgactttaaacatgagcat |
113 |
Q |
| |
|
||||||| | |||||||||||| ||| ||||||| |||||| ||||||||| | | |||||| ||| ||||| ||| ||||||||||||||| | || |
|
|
| T |
11603 |
tatatgccatcaaatctcaattacaaatcatttgctcaataagccatagataattcctaatagagaccgtaatagtattgatgactttaaacataaatat |
11702 |
T |
|
| Q |
114 |
cattgagaagaaaaaagctcaaagggtgtgttccccatttttataaacactttaacatagaaaa |
177 |
Q |
| |
|
|| ||| ||| |||| | |||||||||||||| |||||||| |||||||||||| |||| |||| |
|
|
| T |
11703 |
caatgacaag-aaaatgttcaaagggtgtgtt-cccattttaataaacactttagcataaaaaa |
11764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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