View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_39 (Length: 524)

Name: NF1199_low_39
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_39
NF1199_low_39
[»] chr8 (19 HSPs)
chr8 (416-505)||(900296-900386)
chr8 (416-501)||(37919364-37919450)
chr8 (326-402)||(20821932-20822007)
chr8 (326-402)||(28462539-28462615)
chr8 (416-495)||(28462606-28462685)
chr8 (416-493)||(38362266-38362344)
chr8 (331-398)||(39209364-39209430)
chr8 (416-490)||(39534200-39534275)
chr8 (416-454)||(20821903-20821941)
chr8 (341-398)||(39065545-39065601)
chr8 (416-496)||(29795476-29795556)
chr8 (341-400)||(900244-900303)
chr8 (416-470)||(30924829-30924883)
chr8 (416-470)||(41675733-41675787)
chr8 (330-400)||(42654631-42654700)
chr8 (365-402)||(37919441-37919478)
chr8 (342-402)||(14110626-14110684)
chr8 (416-495)||(39065596-39065676)
chr8 (416-460)||(42654594-42654638)
[»] chr1 (32 HSPs)
chr1 (39-112)||(15419486-15419559)
chr1 (416-514)||(15419713-15419812)
chr1 (290-400)||(15419610-15419720)
chr1 (416-501)||(50127410-50127496)
chr1 (418-495)||(16963639-16963716)
chr1 (416-496)||(31884522-31884603)
chr1 (324-402)||(50468800-50468878)
chr1 (416-496)||(26855889-26855969)
chr1 (416-499)||(44109133-44109217)
chr1 (326-402)||(33827820-33827896)
chr1 (326-402)||(33840069-33840145)
chr1 (326-402)||(40391213-40391289)
chr1 (343-402)||(44109083-44109142)
chr1 (416-470)||(13534559-13534613)
chr1 (416-497)||(27742523-27742604)
chr1 (331-402)||(19066902-19066972)
chr1 (331-402)||(19114792-19114862)
chr1 (331-402)||(26855827-26855898)
chr1 (416-471)||(40391280-40391335)
chr1 (320-402)||(30627605-30627686)
chr1 (416-469)||(19066858-19066911)
chr1 (416-469)||(19114748-19114801)
chr1 (416-468)||(33827887-33827939)
chr1 (416-468)||(33840026-33840078)
chr1 (326-402)||(48282887-48282962)
chr1 (416-468)||(50468869-50468921)
chr1 (427-470)||(20359312-20359355)
chr1 (427-470)||(20551615-20551658)
chr1 (420-493)||(30627681-30627755)
chr1 (420-469)||(18910471-18910520)
chr1 (326-402)||(20471328-20471403)
chr1 (326-402)||(20560134-20560209)
[»] chr5 (21 HSPs)
chr5 (416-500)||(2611211-2611296)
chr5 (416-496)||(7609602-7609683)
chr5 (416-498)||(14863304-14863387)
chr5 (416-491)||(31619295-31619370)
chr5 (416-495)||(35185229-35185307)
chr5 (326-402)||(2611144-2611220)
chr5 (416-501)||(11320091-11320176)
chr5 (331-402)||(11320167-11320237)
chr5 (416-495)||(12187154-12187235)
chr5 (331-402)||(21052629-21052699)
chr5 (325-400)||(22180250-22180324)
chr5 (416-497)||(21052690-21052772)
chr5 (326-402)||(7609536-7609611)
chr5 (416-468)||(22180317-22180369)
chr5 (326-402)||(35185298-35185373)
chr5 (365-402)||(14863378-14863415)
chr5 (416-495)||(16801998-16802078)
chr5 (416-498)||(1447616-1447700)
chr5 (430-496)||(8435026-8435094)
chr5 (416-498)||(28511211-28511295)
chr5 (341-373)||(31619388-31619420)
[»] chr2 (15 HSPs)
chr2 (416-494)||(21646539-21646618)
chr2 (416-497)||(11610472-11610554)
chr2 (416-473)||(18243801-18243858)
chr2 (416-495)||(19889716-19889796)
chr2 (331-400)||(32345521-32345590)
chr2 (351-402)||(4141681-4141732)
chr2 (335-402)||(21646482-21646548)
chr2 (416-496)||(23788468-23788548)
chr2 (326-402)||(19889787-19889863)
chr2 (366-402)||(44818428-44818464)
chr2 (416-472)||(4141635-4141690)
chr2 (365-402)||(23788440-23788477)
chr2 (326-390)||(18243300-18243364)
chr2 (416-468)||(32345477-32345528)
chr2 (416-468)||(37913066-37913118)
[»] chr3 (30 HSPs)
chr3 (416-497)||(43862910-43862992)
chr3 (418-499)||(43014611-43014694)
chr3 (416-495)||(44291292-44291372)
chr3 (418-496)||(23208206-23208285)
chr3 (416-497)||(42163669-42163751)
chr3 (297-402)||(27144041-27144146)
chr3 (416-501)||(32720583-32720668)
chr3 (420-495)||(36258648-36258725)
chr3 (326-402)||(42163602-42163678)
chr3 (326-402)||(44041320-44041396)
chr3 (326-402)||(44291226-44291301)
chr3 (342-402)||(49419063-49419123)
chr3 (416-498)||(15671179-15671262)
chr3 (331-402)||(17109535-17109606)
chr3 (341-402)||(36258720-36258781)
chr3 (416-496)||(43652531-43652612)
chr3 (416-493)||(27143974-27144050)
chr3 (326-402)||(15671113-15671188)
chr3 (331-395)||(23208145-23208209)
chr3 (333-400)||(32720523-32720590)
chr3 (416-498)||(52992414-52992495)
chr3 (331-396)||(43014696-43014760)
chr3 (416-463)||(17109597-17109644)
chr3 (416-490)||(49710921-49710996)
chr3 (416-458)||(35322018-35322060)
chr3 (341-402)||(35322051-35322109)
chr3 (353-402)||(43862983-43863032)
chr3 (416-497)||(49419114-49419195)
chr3 (326-400)||(49710989-49711061)
chr3 (298-402)||(43652437-43652540)
[»] scaffold0006 (2 HSPs)
scaffold0006 (416-497)||(38771-38852)
scaffold0006 (341-402)||(38843-38903)
[»] chr4 (11 HSPs)
chr4 (301-402)||(31241923-31242023)
chr4 (416-501)||(31647686-31647772)
chr4 (336-402)||(38320124-38320190)
chr4 (326-402)||(31647763-31647838)
chr4 (416-495)||(38320181-38320261)
chr4 (420-495)||(20542717-20542792)
chr4 (331-396)||(38319541-38319606)
chr4 (326-400)||(47397649-47397722)
chr4 (416-468)||(19147210-19147262)
chr4 (331-402)||(16341103-16341173)
chr4 (326-402)||(19147144-19147219)
[»] chr7 (16 HSPs)
chr7 (416-496)||(8117506-8117587)
chr7 (326-402)||(22035774-22035850)
chr7 (416-470)||(36636070-36636124)
chr7 (416-468)||(16563532-16563584)
chr7 (416-468)||(16602078-16602130)
chr7 (416-498)||(45907096-45907179)
chr7 (331-402)||(36636009-36636079)
chr7 (416-465)||(19689502-19689550)
chr7 (298-402)||(19689541-19689645)
chr7 (330-402)||(41434743-41434814)
chr7 (331-402)||(45907035-45907105)
chr7 (416-456)||(22035743-22035783)
chr7 (460-496)||(26203126-26203162)
chr7 (416-497)||(41434673-41434752)
chr7 (416-494)||(21798770-21798848)
chr7 (427-497)||(7833817-7833889)
[»] scaffold0068 (2 HSPs)
scaffold0068 (416-468)||(52011-52063)
scaffold0068 (331-402)||(52054-52124)
[»] scaffold0078 (2 HSPs)
scaffold0078 (331-402)||(862-933)
scaffold0078 (416-467)||(924-975)
[»] chr6 (6 HSPs)
chr6 (326-401)||(21809802-21809876)
chr6 (416-497)||(17506233-17506317)
chr6 (416-470)||(21809868-21809922)
chr6 (297-402)||(17506308-17506412)
chr6 (416-472)||(4803150-4803206)
chr6 (416-488)||(10008171-10008244)
[»] scaffold0886 (2 HSPs)
scaffold0886 (337-402)||(1112-1176)
scaffold0886 (416-468)||(1167-1219)
[»] scaffold0034 (2 HSPs)
scaffold0034 (416-496)||(22486-22567)
scaffold0034 (326-402)||(22420-22495)
[»] scaffold1372 (2 HSPs)
scaffold1372 (331-387)||(1272-1327)
scaffold1372 (416-449)||(1344-1377)
[»] scaffold0079 (1 HSPs)
scaffold0079 (331-402)||(51688-51758)
[»] scaffold0204 (1 HSPs)
scaffold0204 (323-355)||(15359-15391)


Alignment Details
Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 505
Target Start/End: Original strand, 900296 - 900386
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgccc-gagggcactggttaacattctccttatttcatt 505  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||||    
T  900296 aataattatattactttttaataaaaacttactttatttggtgtttaaccaatgccctgggagcaccggttaacattctccttatttcatt 900386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 416 - 501
Target Start/End: Complemental strand, 37919450 - 37919364
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacattctccttattt 501  Q
    ||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| |||  ||||| |||||| |||||||||||||    
T  37919450 aataattacattactttttaataaaaatttactttattcggtgcttaaccaatgctccggaggcaccggttaatattctccttattt 37919364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 20822007 - 20821932
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||||||||| ||| |||| |||||||| | | ||||| ||||||||||||||||||||||||||||||||||||||    
T  20822007 actgattaagaaatctatagatagaattgt-tgtcttaaaaatataaattgtcactttttattaagtaataattaca 20821932  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 28462539 - 28462615
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| |||| |||| ||||||||||||||| | |||| |||||||||| | ||||||||||||||||||||||||||    
T  28462539 actggttaaagaatctataaatagaattttttgtcttggaaatataaactatcactttttattaagtaataattaca 28462615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 495
Target Start/End: Original strand, 28462606 - 28462685
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcc 495  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| | ||||||||| | |||||||    
T  28462606 aataattacattactttt-aataaaaacttacttcatttggtgtttaaccaatgtcccgggagcactggtttatattctcc 28462685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 38362266 - 38362344
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacattct 493  Q
    |||||||||||| |||||||||||||| |||||||||||| || |||||||||||  || |||||| ||||||||||||    
T  38362266 aataattacattgctttttaataaaaatttactttatttgatgcttaaccaatgcatcgggggcaccggttaacattct 38362344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 39209364 - 39209430
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataat 398  Q
    ||||||||||||||||||||||||||| | || |||||||||| |||||| ||||||||| |||||||    
T  39209364 ttaaggaatttataaatagaattttctgttttggaaatataaactgtcac-ttttattaaataataat 39209430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 490
Target Start/End: Original strand, 39534200 - 39534275
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgccc-gagggcactggttaacat 490  Q
    ||||||||||||||||||||||||||| |||| | |||||||| ||||| || |||| | ||||||||||||||||    
T  39534200 aataattacattactttttaataaaaatttacctcatttggtgcttaactaacgccctgggggcactggttaacat 39534275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 454
Target Start/End: Complemental strand, 20821941 - 20821903
Alignment:
Q  416 aataattacattactttttaataaaaacttactttattt 454  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20821941 aataattacattactttttaataaaaacttactttattt 20821903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 39065545 - 39065601
Alignment:
Q  341 tataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataat 398  Q
    |||||||||||||| || ||||| ||||||||| ||||||||||||| ||||||||||    
T  39065545 tataaatagaattt-ctgtcttaaaaatataaactgtcactttttatcaagtaataat 39065601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 496
Target Start/End: Complemental strand, 29795556 - 29795476
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcct 496  Q
    ||||||||||||||||||||| ||||||||| ||  ||||||| ||||| |||| ||  || || || |||||||||||||    
T  29795556 aataattacattactttttaacaaaaacttaattcttttggtgcttaacgaatgtccttggacattgtttaacattctcct 29795476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 400
Target Start/End: Original strand, 900244 - 900303
Alignment:
Q  341 tataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 400  Q
    |||||||| |||||||| ||||  |||| |||| ||||| ||||||||||||||||||||    
T  900244 tataaatataattttctgtcttgaaaatttaaactgtcattttttattaagtaataatta 900303  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 470
Target Start/End: Complemental strand, 30924883 - 30924829
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc 470  Q
    ||||||||||||||||| ||| ||||||||||||  ||||||| |||||| ||||    
T  30924883 aataattacattactttctaacaaaaacttacttcttttggtgcttaaccgatgc 30924829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 470
Target Start/End: Original strand, 41675733 - 41675787
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc 470  Q
    |||||||| ||| |||||||||||||| ||||||  ||||||| |||||||||||    
T  41675733 aataattatatttctttttaataaaaatttacttcttttggtgcttaaccaatgc 41675787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 42654700 - 42654631
Alignment:
Q  330 attaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 400  Q
    ||||| |||| ||| |||| |||||| | ||||||||||||||| | ||| ||||||||||||||||||||    
T  42654700 attaaagaatctatcaataaaatttt-tgtcttagaaatataaactatcattttttattaagtaataatta 42654631  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 37919478 - 37919441
Alignment:
Q  365 aaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  37919478 aaatataaactgtcattttttattaagtaataattaca 37919441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 402
Target Start/End: Original strand, 14110626 - 14110684
Alignment:
Q  342 ataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||||| |||||| | |||||||||||||||  ||||||||||| |||||||||||||||    
T  14110626 ataaatataatttt-tgtcttagaaatataaaccgtcacttttta-taagtaataattaca 14110684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 495
Target Start/End: Original strand, 39065596 - 39065676
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgag-ggcactggttaacattctcc 495  Q
    |||||| |||||| ||||||||||||| ||||||  ||| ||| ||||||||||| | || |||||| |||| ||||||||    
T  39065596 aataatgacattattttttaataaaaatttacttcttttagtgcttaaccaatgctccagaggcactagttagcattctcc 39065676  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 460
Target Start/End: Complemental strand, 42654638 - 42654594
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtt 460  Q
    |||||||| ||| ||||| || |||||||||||||||||||||||    
T  42654638 aataattatattgcttttaaaaaaaaacttactttatttggtgtt 42654594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 15419486 - 15419559
Alignment:
Q  39 ccaaatgccgtatttgatgttatttgaacatttaaaagttgacggtgtaattgacactaaataaaattatctat 112  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  15419486 ccaaatgccgtatttgatgttatttgaacatttaatagttgacggtgtaattgacaccaaataaaattatctat 15419559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 416 - 514
Target Start/End: Original strand, 15419713 - 15419812
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacattctccttatttcattgcagtatta 514  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||  | ||| |||||| |||||||||||||||||||| |||||    
T  15419713 aataattatattactttttaataaaaatttactttatttggtgtttaaccaatgctccggagacacgggttaatattctccttatttcattgcactatta 15419812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 290 - 400
Target Start/End: Original strand, 15419610 - 15419720
Alignment:
Q  290 tgtttcatgggtcttgttaacagatgctcctgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttatta 389  Q
    ||||||||||||||||||||||| |||||| | | ||||| |||| |||| ||||||||||||||| | | || |||||||||| ||| |||||||||||    
T  15419610 tgtttcatgggtcttgttaacaggtgctcccgtggtactggttaatgaatctataaatagaattttttgtattggaaatataaactgttactttttatta 15419709  T
Q  390 agtaataatta 400  Q
    |||||||||||    
T  15419710 agtaataatta 15419720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 416 - 501
Target Start/End: Original strand, 50127410 - 50127496
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctccttattt 501  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||||||| |||| ||||||||||||||||||||| |||||    
T  50127410 aataattacattactttttaataaaaacttacttcttttggtacttaaccaatgccccgggggcactggttaacattctccatattt 50127496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 418 - 495
Target Start/End: Original strand, 16963639 - 16963716
Alignment:
Q  418 taattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcc 495  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |  |||||||||||||||||||||    
T  16963639 taattacattactttttaataaaaatttacttcatttggtgcttaaccaatgctccggggcactggttaacattctcc 16963716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 31884522 - 31884603
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcc-cgagggcactggttaacattctcct 496  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |  ||||| ||||||||||||||||    
T  31884522 aataattacattactttttaataaaaacttactttttttggtgcttaaccaatgcctccggggcaatggttaacattctcct 31884603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 402
Target Start/End: Original strand, 50468800 - 50468878
Alignment:
Q  324 atactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||||| ||||||||| |||||||| |||||||| ||||||||||||||  ||||| ||||||||||||||||||||||    
T  50468800 atactggttaaggaatctataaataaaattttctatcttagaaatataacctgtcattttttattaagtaataattaca 50468878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 26855889 - 26855969
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcct 496  Q
    |||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||  ||||| |||||||||||||||    
T  26855889 aataattacattactttt-aataaaaatttactttatttggtgcttaaccaatgccccggaggcaccggttaacattctcct 26855969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 416 - 499
Target Start/End: Original strand, 44109133 - 44109217
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccga-gggcactggttaacattctccttat 499  Q
    |||||||||||||||||||||||||||||||||| |||| ||| |||| ||||| ||||| ||||||||||||||||| |||||||    
T  44109133 aataattacattactttttaataaaaacttacttcattt-gtggttaatcaatgccccgaggggcactggttaacattatccttat 44109217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 33827820 - 33827896
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| ||||||||| |||||||| |||||||| |||| ||||||||||   ||||||||||||||||||||||||||    
T  33827820 actggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttattaagtaataattaca 33827896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 33840145 - 33840069
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| ||||||||| |||||||| |||||||| |||| ||||||||||   ||||||||||||||||||||||||||    
T  33840145 actggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttattaagtaataattaca 33840069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 40391213 - 40391289
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||||||||| ||| ||||||| ||||||||| ||||  ||||||||| ||||||||||||| ||||||||||||||    
T  40391213 actgattaagaaatctataaatcgaattttctgtcttgaaaatataaactgtcactttttatcaagtaataattaca 40391289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 343 - 402
Target Start/End: Original strand, 44109083 - 44109142
Alignment:
Q  343 taaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||||||    
T  44109083 taaatagaattttctatcttggaaatataaactgtccctttttattaagtaataattaca 44109142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 470
Target Start/End: Original strand, 13534559 - 13534613
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc 470  Q
    ||||||||||||||||||||||||||| ||||||||||||| | |||||||||||    
T  13534559 aataattacattactttttaataaaaatttactttatttggcgcttaaccaatgc 13534613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 497
Target Start/End: Complemental strand, 27742604 - 27742523
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcctt 497  Q
    ||||||||||||||||||||||||||| ||||||  |||| || |||||||||||||| |  |||  |||||||||||||||    
T  27742604 aataattacattactttttaataaaaaattacttcttttgttgcttaaccaatgcccgggaacaccagttaacattctcctt 27742523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 402
Target Start/End: Complemental strand, 19066972 - 19066902
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||| ||| ||||||||||||| | | ||||||||||||||||||||||||||||  ||||||||||||||    
T  19066972 ttaagaaatctataaatagaattgt-tgtcttagaaatataaattgtcactttttaccaagtaataattaca 19066902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 402
Target Start/End: Complemental strand, 19114862 - 19114792
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||| ||| ||||||||||||| | | ||||||||||||||||||||||||||||  ||||||||||||||    
T  19114862 ttaagaaatctataaatagaattgt-tgtcttagaaatataaattgtcactttttaccaagtaataattaca 19114792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 26855827 - 26855898
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| |||| ||||||||||||||| | |||| |||||||||  ||||||||||||| ||||||||||||||    
T  26855827 ttaaagaatctataaatagaattttttgtcttggaaatataatctgtcactttttatcaagtaataattaca 26855898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 471
Target Start/End: Original strand, 40391280 - 40391335
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcc 471  Q
    ||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||    
T  40391280 aataattacattactttttgataaaaactcacttcatttggtgcttaaccaatgcc 40391335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 320 - 402
Target Start/End: Original strand, 30627605 - 30627686
Alignment:
Q  320 tgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||| |||||||||||||| ||||||||||| ||| | |||| |||||||||  ||||||||||||| ||||||| ||||||    
T  30627605 tgagacactgattaaggaatctataaatagaa-tttatgtcttggaaatataacctgtcactttttataaagtaatgattaca 30627686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 469
Target Start/End: Complemental strand, 19066911 - 19066858
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg 469  Q
    |||||||||| |||||||||||||||| ||||||||||||| | ||||||||||    
T  19066911 aataattacaatactttttaataaaaatttactttatttggcgcttaaccaatg 19066858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 469
Target Start/End: Complemental strand, 19114801 - 19114748
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg 469  Q
    |||||||||| |||||||||||||||| ||||||||||||| | ||||||||||    
T  19114801 aataattacaatactttttaataaaaatttactttatttggcgcttaaccaatg 19114748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 33827887 - 33827939
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 468  Q
    ||||||||||||||||||||||||||| ||| ||||||||||  |||||||||    
T  33827887 aataattacattactttttaataaaaagttattttatttggttcttaaccaat 33827939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 33840078 - 33840026
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 468  Q
    ||||||||||||||||||||||||||| ||| ||||||||||  |||||||||    
T  33840078 aataattacattactttttaataaaaagttattttatttggttcttaaccaat 33840026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 48282887 - 48282962
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| ||||||||| |||||||||||||| || ||||  ||||||||  ||||||||||||| | ||||||||||||    
T  48282887 actggttaaggaatctataaatagaattt-ctgtcttgaaaatataatctgtcactttttatcaggtaataattaca 48282962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 50468869 - 50468921
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 468  Q
    ||||||||||||||||||||||||||| |||||||| ||| |  |||||||||    
T  50468869 aataattacattactttttaataaaaatttactttacttgatacttaaccaat 50468921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 470
Target Start/End: Original strand, 20359312 - 20359355
Alignment:
Q  427 tactttttaataaaaacttactttatttggtgtttaaccaatgc 470  Q
    |||||||||||||||||||||||||||| | | |||||||||||    
T  20359312 tactttttaataaaaacttactttatttagcgcttaaccaatgc 20359355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 470
Target Start/End: Complemental strand, 20551658 - 20551615
Alignment:
Q  427 tactttttaataaaaacttactttatttggtgtttaaccaatgc 470  Q
    |||||||||||||||||||||||||||| | | |||||||||||    
T  20551658 tactttttaataaaaacttactttatttagcgcttaaccaatgc 20551615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 493
Target Start/End: Original strand, 30627681 - 30627755
Alignment:
Q  420 attacattactttttaat-aaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattct 493  Q
    |||||||||||||||||| ||||| ||||||   |||||| ||||||||||| |  |||||| ||||||||||||    
T  30627681 attacattactttttaattaaaaatttacttctcttggtgcttaaccaatgcacctgggcaccggttaacattct 30627755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 469
Target Start/End: Original strand, 18910471 - 18910520
Alignment:
Q  420 attacattactttttaataaaaacttactttatttggtgtttaaccaatg 469  Q
    ||||||||||||||||||||||| ||| ||  |||||||||||| |||||    
T  18910471 attacattactttttaataaaaatttatttcttttggtgtttaatcaatg 18910520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 20471328 - 20471403
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| ||||| ||| |||||||| |||| | | ||||||||||||||| ||||||||||||| ||  ||||||||||    
T  20471328 actggttaagaaatctataaatataattgt-tgtcttagaaatataaactgtcactttttatcaaaaaataattaca 20471403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 20560209 - 20560134
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| ||||| ||| |||||||| |||| | | ||||||||||||||| ||||||||||||| ||  ||||||||||    
T  20560209 actggttaagaaatctataaatataattgt-tgtcttagaaatataaactgtcactttttatcaaaaaataattaca 20560134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 416 - 500
Target Start/End: Original strand, 2611211 - 2611296
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccga-gggcactggttaacattctccttatt 500  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||||||||||||||||||    
T  2611211 aataattacattactttttaataaaaacttacttcatttggtgcttaaccaatgccccaggggccctggttaacattctccttatt 2611296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 7609602 - 7609683
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcct 496  Q
    ||||||||||||||||||||||||||||||||||  ||||||| |||||||||| |||| | ||||||||||||||||||||    
T  7609602 aataattacattactttttaataaaaacttacttcttttggtgcttaaccaatgccccgggagcactggttaacattctcct 7609683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 416 - 498
Target Start/End: Complemental strand, 14863387 - 14863304
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcctta 498  Q
    ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||  ||| |||||||| |||||||||||||||    
T  14863387 aataattacattaatttttaataaaaacttactttttttggtgcttaaccaatgttccgggggcactgattaacattctcctta 14863304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 416 - 491
Target Start/End: Complemental strand, 31619370 - 31619295
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacatt 491  Q
    ||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||   ||||||||||||||||    
T  31619370 aataattacattactttttaataaaaatttacttcatttggtgcttaaccaatgcccagaggcactggttaacatt 31619295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 416 - 495
Target Start/End: Complemental strand, 35185307 - 35185229
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcc 495  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||  |||  ||||||||||||||    
T  35185307 aataattacattactttttaataaaaacttattttatttggtgcttaaccaatacccga-agcatcggttaacattctcc 35185229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 2611144 - 2611220
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| ||||||||| ||||||||||| ||| | |||| |||||||||  ||||||||||||||||||||||||||||    
T  2611144 actggttaaggaatctataaatagaaatttatgtcttggaaatataagctgtcactttttattaagtaataattaca 2611220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 501
Target Start/End: Complemental strand, 11320176 - 11320091
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctccttattt 501  Q
    ||||||||||||||||||||||||||| | ||||| ||||||| |||||||||| | | | | ||||||||||||||||||||||||    
T  11320176 aataattacattactttttaataaaaattaacttt-tttggtgcttaaccaatgtctcaatgacactggttaacattctccttattt 11320091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 402
Target Start/End: Complemental strand, 11320237 - 11320167
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||||||| ||||| || ||||| || ||||||||||||||| ||||||||||||| ||||||||||||||    
T  11320237 ttaaggaatctataattaaaattt-ctatcttagaaatataaactgtcactttttatcaagtaataattaca 11320167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 495
Target Start/End: Complemental strand, 12187235 - 12187154
Alignment:
Q  416 aataattacattacttttt-aataaaaacttactttatttggtgtttaaccaatgcccgaggg-cactggttaacattctcc 495  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||| |||| |||||||  |||| ||| ||||||||||||||    
T  12187235 aataattacattatttttttaataaaaacttaccttatttggtgcttaatcaatgcctcagggacacaggttaacattctcc 12187154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 21052629 - 21052699
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||||||||||||||||| ||||| |  ||||  ||||||||| ||||||||||||| ||||||||||||||    
T  21052629 ttaaggaatttataaataaaatttcca-tcttgcaaatataaactgtcactttttatcaagtaataattaca 21052699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 400
Target Start/End: Original strand, 22180250 - 22180324
Alignment:
Q  325 tactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 400  Q
    ||||||||||||||| |||||||| |||||||| | ||  ||||||||| ||||| |||||||||| |||||||||    
T  22180250 tactgattaaggaatctataaataaaattttctattttgaaaatataaactgtca-tttttattaaataataatta 22180324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 21052690 - 21052772
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagg-gcactggttaacattctcctt 497  Q
    ||||||||||| | ||||||||||||||||||||  ||||||| ||||||||||  | |||  ||||| ||||||||||||||    
T  21052690 aataattacatgattttttaataaaaacttacttcttttggtgcttaaccaatgttccaggtacactgattaacattctcctt 21052772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 7609536 - 7609611
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||||||||||||| ||||| |||||||| || | || |||||||||| | ||| ||||||| ||||||||||||||    
T  7609536 actgattaaggaatctataattagaattt-ctgttttggaaatataaactatcattttttatcaagtaataattaca 7609611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 22180317 - 22180369
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 468  Q
    |||||||| |||| ||||||||||||| ||| ||||||||||| |||||||||    
T  22180317 aataattatattattttttaataaaaatttattttatttggtgcttaaccaat 22180369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 35185373 - 35185298
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| |||| |||| ||||||||||||||| | ||||  ||||||||| |||||| ||||||| |||||||||||||    
T  35185373 actggttaaagaatctataaatagaattttatgtcttgaaaatataaactgtcac-ttttatttagtaataattaca 35185298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 14863415 - 14863378
Alignment:
Q  365 aaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  14863415 aaatataaactgtcactttttatcaagtaataattaca 14863378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 495
Target Start/End: Complemental strand, 16802078 - 16801998
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttgg-tgtttaaccaatgccc-gagggcactggttaacattctcc 495  Q
    ||||||||||||||||||| ||||||| ||| ||  ||||| || ||||||||| ||| |||||||||| ||||||||||||    
T  16802078 aataattacattacttttt-ataaaaagttatttgttttggttgcttaaccaataccctgagggcactgtttaacattctcc 16801998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 1447616 - 1447700
Alignment:
Q  416 aataattacattactttttaataaaaacttactt-tatttggtgtttaaccaatgccc-gagggcactggttaacattctcctta 498  Q
    |||||||||| ||||||| | ||||||||||||| | |||| || |||||||||||||  |||||| | |||| |||||||||||    
T  1447616 aataattacactacttttcattaaaaacttacttatttttgttgcttaaccaatgccctaagggcaatagttagcattctcctta 1447700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 496
Target Start/End: Complemental strand, 8435094 - 8435026
Alignment:
Q  430 tttttaataaaaacttactttatttgg-tgtttaaccaatgcccgaggg-cactggttaacattctcct 496  Q
    |||||||||||| |||||||  ||||| || ||||||||||||  |||| |||||||||||||||||||    
T  8435094 tttttaataaaatcttacttattttggatgcttaaccaatgcctcaggggcactggttaacattctcct 8435026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 28511211 - 28511295
Alignment:
Q  416 aataattacattacttttta-ataaaaacttactttatttggt-gtttaaccaatgcccgagggcactggttaacattctcctta 498  Q
    |||||||||| ||||||||  |||||||||||| |  |||||| | ||||||||| ||| ||||||| |||||||||||| ||||    
T  28511211 aataattacactactttttttataaaaacttacatgttttggttgcttaaccaataccccagggcaccggttaacattctactta 28511295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 31619420 - 31619388
Alignment:
Q  341 tataaatagaattttctctcttagaaatataaa 373  Q
    ||||||||||||||||| |||||||||||||||    
T  31619420 tataaatagaattttctgtcttagaaatataaa 31619388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 416 - 494
Target Start/End: Original strand, 21646539 - 21646618
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctc 494  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||    
T  21646539 aataattacattactttttaatgaaaacttacttcatttggtgtttaaccaatgcccctagggcactggttaacattctc 21646618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 11610472 - 11610554
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcctt 497  Q
    ||||||| |||||||||||||| ||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||    
T  11610472 aataattgcattactttttaatgaaaacttacttcatttggtgcttaaccaatgccccgggggcactggttaacattctcctt 11610554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 473
Target Start/End: Original strand, 18243801 - 18243858
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccg 473  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18243801 aataattatattactttttaataaaaacttactttatttggtgcttaaccaatgcccg 18243858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 416 - 495
Target Start/End: Complemental strand, 19889796 - 19889716
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcc 495  Q
    |||||||||||||||||||||| ||||||||||| ||||| || |||||||||| ||||| ||||||| ||||||||||||    
T  19889796 aataattacattactttttaatgaaaacttacttcatttgatgcttaaccaatgccccgaaggcactgattaacattctcc 19889716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 331 - 400
Target Start/End: Complemental strand, 32345590 - 32345521
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 400  Q
    |||||||| |||||||||||||||||| ||||| ||||||||| ||||| |||||||||| |||||||||    
T  32345590 ttaaggaaattataaatagaattttctgtcttaaaaatataaactgtcattttttattaaataataatta 32345521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 402
Target Start/End: Complemental strand, 4141732 - 4141681
Alignment:
Q  351 attttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  4141732 attttctctcttagaaatataaaccgtcactttttattcagtaataattaca 4141681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 402
Target Start/End: Original strand, 21646482 - 21646548
Alignment:
Q  335 ggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||| |||| |||||||||||| |||| |||||||||| |||||| |||||||||||||||||||||    
T  21646482 ggaatctatacatagaattttctgtcttggaaatataaagtgtcac-ttttattaagtaataattaca 21646548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 23788468 - 23788548
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacattctcct 496  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||||| |||| | |||||  || ||||||||||||||||    
T  23788468 aataattacattactttttaataaaaattta-tttttttggtgtttaatcaatacaccgagaacattggttaacattctcct 23788548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 19889863 - 19889787
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| ||||| ||| ||||||||||||||| | | || |||||||||  |||||| |||||||||||||||||||||    
T  19889863 actggttaagaaatctataaatagaattttatgttttggaaatataatatgtcaccttttattaagtaataattaca 19889787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 402
Target Start/End: Original strand, 44818428 - 44818464
Alignment:
Q  366 aatataaattgtcactttttattaagtaataattaca 402  Q
    |||||||||||||||||||||||||||||||||||||    
T  44818428 aatataaattgtcactttttattaagtaataattaca 44818464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 4141690 - 4141635
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgccc 472  Q
    |||||||||||||||||| |||||||| |||||||||||| || |||| ||||||||    
T  4141690 aataattacattactttt-aataaaaatttactttatttgatgcttaatcaatgccc 4141635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 23788440 - 23788477
Alignment:
Q  365 aaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  23788440 aaatataaattatcattttttattaagtaataattaca 23788477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 18243300 - 18243364
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaa 390  Q
    |||| ||||||||| |||||||| |||||| | | || |||||||||| | ||||||||||||||    
T  18243300 actggttaaggaatctataaataaaattttttgttttggaaatataaactttcactttttattaa 18243364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 32345528 - 32345477
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 468  Q
    |||||||| |||| ||||| |||||||||||||||||||  ||||||||||||    
T  32345528 aataattatatta-tttttgataaaaacttactttatttattgtttaaccaat 32345477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 37913066 - 37913118
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 468  Q
    |||||| |||||| ||||||||||||||||||||  |||| || |||||||||    
T  37913066 aataatcacattaatttttaataaaaacttacttcttttgatgcttaaccaat 37913118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 416 - 497
Target Start/End: Complemental strand, 43862992 - 43862910
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccga-gggcactggttaacattctcctt 497  Q
    |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| | |||||| ||||||||||||||||    
T  43862992 aataattacattactttttaataaaaacttacttcatttggggcttaaccaatgccccaggggcaccggttaacattctcctt 43862910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 418 - 499
Target Start/End: Complemental strand, 43014694 - 43014611
Alignment:
Q  418 taattacattactttttaataaaaacttactttatttggtgtttaaccaatgccc--gagggcactggttaacattctccttat 499  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||   ||||||||| ||||||||||||||||    
T  43014694 taattacattactttttaacaaaaacttactttatttggtgcttaatcaatgccccgaagggcactgattaacattctccttat 43014611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 416 - 495
Target Start/End: Original strand, 44291292 - 44291372
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcc 495  Q
    ||||||||||||||||||||||||| ||||||||  ||||||| |||||||||| |||| |||||||||||||||||||||    
T  44291292 aataattacattactttttaataaatacttacttcttttggtgcttaaccaatgccccgggggcactggttaacattctcc 44291372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 418 - 496
Target Start/End: Original strand, 23208206 - 23208285
Alignment:
Q  418 taattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcct 496  Q
    |||||||||||||||||||||||||| || |||||||||| ||||||||||| |||| |||||| |||||||||||||||    
T  23208206 taattacattactttttaataaaaacgtattttatttggtatttaaccaatgtcccgggggcaccggttaacattctcct 23208285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 42163669 - 42163751
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcctt 497  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||  ||||| ||||||||||| ||||    
T  42163669 aataattacattactttttaataaaaacttacttcatttggtgtgtaaccaatgccccggaggcaccggttaacattcccctt 42163751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 402
Target Start/End: Complemental strand, 27144146 - 27144041
Alignment:
Q  297 tgggtcttgttaacagatgctcctgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaata 396  Q
    |||||||||||||| | ||| |  |||  |||| ||||| ||| ||||||||||||||||| | ||||||||||||| ||| ||||||||||||||||||    
T  27144146 tgggtcttgttaaccggtgccctcgaggcactggttaagaaatctataaatagaattttctgtattagaaatataaactgtgactttttattaagtaata 27144047  T
Q  397 attaca 402  Q
    ||||||    
T  27144046 attaca 27144041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 501
Target Start/End: Original strand, 32720583 - 32720668
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctccttattt 501  Q
    |||||||| |||| |||||||||||||||||||| |||| ||| ||||||||| | | ||||||||| ||||||||||||||||||    
T  32720583 aataattatattattttttaataaaaacttacttaatttagtgcttaaccaatactccagggcactgattaacattctccttattt 32720668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 420 - 495
Target Start/End: Complemental strand, 36258725 - 36258648
Alignment:
Q  420 attacattacttttt-aataaaaacttactttatttggtgtttaaccaatgcccgagg-gcactggttaacattctcc 495  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||||    
T  36258725 attacattacttttttaataaaaacttactttatttggtgtttaacccatgccctaggagcactcgttaacattctcc 36258648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 42163602 - 42163678
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| ||||||||| ||| ||||||||||||| |||| ||||||||||  |||||||||||||||||||||||||||    
T  42163602 actggttaaggaatctattaatagaattttctgtcttggaaatataaaccgtcactttttattaagtaataattaca 42163678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 44041320 - 44041396
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| |||| |||| ||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||||||    
T  44041320 actggttaatgaatctataaatagaattttctgtcttggtaatataaactgtcactttttattaagtaataattaca 44041396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 44291226 - 44291301
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| ||||||||| |||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||    
T  44291226 actggttaaggaatctataaatagaattt-ctgtcttggaaatataaactgtcactttttattaagtaataattaca 44291301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 342 - 402
Target Start/End: Original strand, 49419063 - 49419123
Alignment:
Q  342 ataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  49419063 ataaatagaattttctgtattagaaatataaattgtcactttttattaactaataattaca 49419123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 15671179 - 15671262
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacattctcctta 498  Q
    |||||||||||||||||||||||||||||||||| |||||||  ||||||||||| |||   | ||||||||||||||||||||    
T  15671179 aataattacattactttttaataaaaacttacttcatttggttcttaaccaatgctccgtatgtactggttaacattctcctta 15671262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 17109535 - 17109606
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||| ||||||||||||||||||||| |||| |||||||||| ||| || |||||||||||||||||||||    
T  17109535 ttaagaaatttataaatagaattttctatcttggaaatataaactgtaacattttattaagtaataattaca 17109606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 341 - 402
Target Start/End: Complemental strand, 36258781 - 36258720
Alignment:
Q  341 tataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||    
T  36258781 tataaatagaattttctgtcttagaaatataaaatgtcattttttattaagtaatcattaca 36258720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 43652531 - 43652612
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcct 496  Q
    |||||||||||||||||||| || |||||||||| |||||||| |||||  ||| ||||| |||||||||||||||||||||    
T  43652531 aataattacattactttttagtagaaacttacttcatttggtgcttaacggatgtcccgaaggcactggttaacattctcct 43652612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 27144050 - 27143974
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattct 493  Q
    ||||||||||||| ||||||||||||||||| || ||||| || |||||||||||| | ||||| |||||||||||||    
T  27144050 aataattacattattttttaataaaaacttagttcatttgttgcttaaccaatgcctg-gggcattggttaacattct 27143974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 15671113 - 15671188
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| ||||||||| |||||||| |||||| | |||| |||||||||| ||||||||||||| ||||||||||||||    
T  15671113 actggttaaggaatctataaataaaatttt-tgtcttcgaaatataaactgtcactttttatcaagtaataattaca 15671188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 23208145 - 23208209
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaat 395  Q
    ||||| ||| ||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||    
T  23208145 ttaagaaatctataaatagaattttctgtcttgaaaatataaactgtcactttttattaagtaat 23208209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 32720523 - 32720590
Alignment:
Q  333 aaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 400  Q
    ||||||| ||| ||||||||||||| ||||  ||||||||| ||||||| ||||||||||||||||||    
T  32720523 aaggaatctattaatagaattttctttcttgaaaatataaactgtcactatttattaagtaataatta 32720590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 498
Target Start/End: Complemental strand, 52992495 - 52992414
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcctta 498  Q
    ||||||||||||| |||||  |||||| ||||||||||||||| ||||||||||  || ||  ||||||||||||||||||||    
T  52992495 aataattacattattttttggtaaaaaattactttatttggtgcttaaccaatg-tcggggttactggttaacattctcctta 52992414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 43014760 - 43014696
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaata 396  Q
    |||| ||||||||||||| |||||||| |||| ||||||||||||||||| ||||||| |||||||    
T  43014760 ttaaagaatttataaatataattttctgtcttggaaatataaattgtcac-ttttatttagtaata 43014696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 17109597 - 17109644
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaa 463  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  17109597 aataattacataactttttaataaaaatttactttatttagtgtttaa 17109644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 490
Target Start/End: Complemental strand, 49710996 - 49710921
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacat 490  Q
    |||||||| |||| ||||||||||||||||| ||||||||||| |||| |||||| |||  |||| ||||||||||    
T  49710996 aataattatattaatttttaataaaaacttattttatttggtgcttaatcaatgctccggaggcaatggttaacat 49710921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 458
Target Start/End: Complemental strand, 35322060 - 35322018
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtg 458  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  35322060 aataattacattactttttaataaaaacttacttcttttggtg 35322018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 402
Target Start/End: Complemental strand, 35322109 - 35322051
Alignment:
Q  341 tataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||||||||||||| |||  |||||||||||| | ||||||||||||||||||||||||||    
T  35322109 tataaatagaattttgtct--tagaaatataaact-tcactttttattaagtaataattaca 35322051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 353 - 402
Target Start/End: Complemental strand, 43863032 - 43862983
Alignment:
Q  353 tttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||| |||| |||||||||| ||||||| ||||||||||||||||||||    
T  43863032 tttctgtcttggaaatataaactgtcactctttattaagtaataattaca 43862983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 49419114 - 49419195
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagg-gcactggttaacattctcctt 497  Q
    ||||||||||| |||||||||| |||| | | |||| |||||||||||| ||||||| ||| |||  ||||||||||||||||    
T  49419114 aataattacataactttttaat-aaaattgattttacttggtgtttaacgaatgccctaggagcatcggttaacattctcctt 49419195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 400
Target Start/End: Complemental strand, 49711061 - 49710989
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 400  Q
    |||| ||||||||| ||||||||||| ||||| ||||||||||||||| ||| | |||||| ||| |||||||||    
T  49711061 actggttaaggaatctataaatagaa-tttctgtcttagaaatataaaatgttatttttta-taaataataatta 49710989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 402
Target Start/End: Original strand, 43652437 - 43652540
Alignment:
Q  298 gggtcttgttaacagatgctcctgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataa 397  Q
    |||| |||||||| |||||||  |||  | |||||||||||| |||||||| || ||||| |||| |||||||||  ||||| ||||||| |  ||||||    
T  43652437 gggttttgttaaccgatgctctcgaggcattgattaaggaatctataaata-aaatttctatcttggaaatataatctgtcattttttatcagataataa 43652535  T
Q  398 ttaca 402  Q
    |||||    
T  43652536 ttaca 43652540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 416 - 497
Target Start/End: Complemental strand, 38852 - 38771
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcctt 497  Q
    ||||||||||||||||||||||||||||||| |||||||| |  ||||||||||| | || |||||||||||||||||||||    
T  38852 aataattacattactttttaataaaaacttattttatttgattcttaaccaatgctccagagcactggttaacattctcctt 38771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 402
Target Start/End: Complemental strand, 38903 - 38843
Alignment:
Q  341 tataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||||||||||||  | |||| |||||||||| ||||| ||||||| ||||||||||||||    
T  38903 tataaatagaattta-tatcttggaaatataaactgtcattttttatcaagtaataattaca 38843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 31241923 - 31242023
Alignment:
Q  301 tcttgttaacagatgctcctgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 400  Q
    |||||||||| ||||| || ||||||||| ||||||||| ||||||||||||||||| ||||  |||||||||  ||||||||||||||| |||||||||    
T  31241923 tcttgttaaccgatgcccc-gagatactggttaaggaatctataaatagaattttctgtcttgaaaatataaacggtcactttttattaaataataatta 31242021  T
Q  401 ca 402  Q
    ||    
T  31242022 ca 31242023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 416 - 501
Target Start/End: Complemental strand, 31647772 - 31647686
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcc-cgagggcactggttaacattctccttattt 501  Q
    ||||||||||||||||||||||||||||||| ||  ||||||| ||||||||| || || |||||| ||||||||||||||||||||    
T  31647772 aataattacattactttttaataaaaacttatttcttttggtgcttaaccaatacctcgggggcaccggttaacattctccttattt 31647686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 38320124 - 38320190
Alignment:
Q  336 gaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| ||||||||||||||||| |||| |||||||||| |||||||| |||||||||||||||||||    
T  38320124 gaatctataaatagaattttctgtcttggaaatataaactgtcacttcttattaagtaataattaca 38320190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 31647838 - 31647763
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||||||| |||| |||||||||||||| || ||||||||||||||| | ||||||||||| ||||||||||||||    
T  31647838 actgattaaagaatctataaatagaattt-ctgtcttagaaatataaactatcactttttatcaagtaataattaca 31647763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 495
Target Start/End: Original strand, 38320181 - 38320261
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcc 495  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| |||| | |  | |||||||||||||||||||    
T  38320181 aataattacattactttttaataaaaacttactttatttgatgcttaactaatgtctctggcgcactggttaacattctcc 38320261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 495
Target Start/End: Original strand, 20542717 - 20542792
Alignment:
Q  420 attacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcc 495  Q
    |||| |||||||||||||||||||||| ||  ||||||| |||||||||||||  ||||||| |||||||||||||    
T  20542717 attatattactttttaataaaaacttaattcttttggtgcttaaccaatgccccggggcactagttaacattctcc 20542792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 38319541 - 38319606
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaata 396  Q
    ||||||||| ||||||||||||||||| | ||  ||||||||| ||||||||||||||||||||||    
T  38319541 ttaaggaatctataaatagaattttctgttttgaaaatataaactgtcactttttattaagtaata 38319606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 326 - 400
Target Start/End: Complemental strand, 47397722 - 47397649
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 400  Q
    |||| ||||||||| |||||||||||||| || | ||||||||||||| ||||||||||||| || |||||||||    
T  47397722 actggttaaggaatctataaatagaattt-ctattttagaaatataaactgtcactttttatcaaataataatta 47397649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 19147210 - 19147262
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 468  Q
    |||||||||||||||| |||||||||||||||||  ||||||| |||| ||||    
T  19147210 aataattacattacttattaataaaaacttacttcttttggtgcttaatcaat 19147262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 16341103 - 16341173
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||||||||||| ||||| |||||| | |||| |||||||||| ||| |||||| |||||||||| ||||||    
T  16341103 ttaaggaatttacaaataaaatttt-tgtctttgaaatataaaatgttacttttgattaagtaatgattaca 16341173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 19147144 - 19147219
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| ||||| ||| ||||| |||||||| || ||||  ||||||||| ||||||||||||| || |||||||||||    
T  19147144 actggttaagaaatctataagtagaattt-ctgtcttgaaaatataaactgtcactttttatcaaataataattaca 19147219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 8117506 - 8117587
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcct 496  Q
    |||||||||||||||||||||||||||||||||| |||| | |||||||||||| |||| || ||||| |||||||||||||    
T  8117506 aataattacattactttttaataaaaacttacttcatttagcgtttaaccaatgccccggggtcactgattaacattctcct 8117587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 22035850 - 22035774
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||| |||| |||| ||||||||||||||||| |||| |||||||||| |||||||||||| |||||||||||||||    
T  22035850 actggttaatgaatctataaatagaattttctgtcttggaaatataaactgtcactttttaataagtaataattaca 22035774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 416 - 470
Target Start/End: Original strand, 36636070 - 36636124
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc 470  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  36636070 aataattacattattttttaataaaaacttactttatttggtgcttaaccaatgc 36636124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 16563532 - 16563584
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 468  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  16563532 aataattacattactttttaataaaaacttaatttatttagtgtttaaccaat 16563584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 16602130 - 16602078
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 468  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  16602130 aataattacattactttttaataaaaacttaatttatttagtgtttaaccaat 16602078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 45907096 - 45907179
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat-gcccgagggcactggttaacattctcctta 498  Q
    ||||||||||||||||||||||||||||||||||  |||  || |||||||||  |||| || |||||||||||||||||||||    
T  45907096 aataattacattactttttaataaaaacttacttctttttatgcttaaccaatatcccggggacactggttaacattctcctta 45907179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 36636009 - 36636079
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||||||||| |||||||||||||||| |||| || |||||||  ||||| |||||||||||||||||||||    
T  36636009 ttaaggaatt-ataaatagaattttctatcttggagatataaacggtcaccttttattaagtaataattaca 36636079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 465
Target Start/End: Complemental strand, 19689550 - 19689502
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaacc 465  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  19689550 aataattacattactttttaat-aaaacttacttcatttggtgtttaacc 19689502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 402
Target Start/End: Complemental strand, 19689645 - 19689541
Alignment:
Q  298 gggtcttgttaacagatgctcctgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataa 397  Q
    ||||||||||||| | |||  | |||| |||||||||||||| |||||||| || ||||| ||||  ||||||||| | ||||||  |||||| ||||||    
T  19689645 gggtcttgttaaccggtgcctccgagacactgattaaggaatctataaatacaactttctatcttgtaaatataaactatcacttcgtattaaataataa 19689546  T
Q  398 ttaca 402  Q
    |||||    
T  19689545 ttaca 19689541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 402
Target Start/End: Complemental strand, 41434814 - 41434743
Alignment:
Q  330 attaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||| |||| |||||||| ||||| || ||||||||||||||| ||||||||||||| || |||||||||||    
T  41434814 attaaagaatctataaatataattt-ctgtcttagaaatataaactgtcactttttatcaaataataattaca 41434743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 45907035 - 45907105
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||||||| |||||||||| |||| | ||||  ||||||||| ||||||||||||| ||||||||||||||    
T  45907035 ttaaggaatctataaatagattttt-tgtcttgtaaatataaactgtcactttttatcaagtaataattaca 45907105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 22035783 - 22035743
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttgg 456  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  22035783 aataattacattattttttaataaaaacttacttcatttgg 22035743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 496
Target Start/End: Original strand, 26203126 - 26203162
Alignment:
Q  460 ttaaccaatgcccgagggcactggttaacattctcct 496  Q
    |||||||||||||| ||||||||||||||||||||||    
T  26203126 ttaaccaatgcccgggggcactggttaacattctcct 26203162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 497
Target Start/End: Complemental strand, 41434752 - 41434673
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacattctcctt 497  Q
    ||||||||||||| ||||||||||||| |||||   ||| ||||||||||||||| ||| | ||  |||||||||||||||||    
T  41434752 aataattacattattttttaataaaaatttact---tttagtgtttaaccaatgctccgggagccttggttaacattctcctt 41434673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 494
Target Start/End: Complemental strand, 21798848 - 21798770
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgag-ggcactggttaacattctc 494  Q
    |||||||||||||||| |||||||||| ||||||  ||||||| |||||||| ||||  | ||||||| |||||||||||    
T  21798848 aataattacattacttcttaataaaaa-ttacttcttttggtgcttaaccaaagcccccgcggcactgtttaacattctc 21798770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 497
Target Start/End: Original strand, 7833817 - 7833889
Alignment:
Q  427 tactttttaataaaaacttactttatttgg-tgtttaaccaatgccc-gagggcactggttaacattctcctt 497  Q
    ||||||||||||||| |||||||  ||||| || |||||||||||||   ||||| |||||||||||||||||    
T  7833817 tactttttaataaaatcttacttgttttggctgcttaaccaatgccctcggggcattggttaacattctcctt 7833889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 52063 - 52011
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 468  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  52063 aataattacattactttttaataaaaacttactttatttagcgtttaaccaat 52011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 402
Target Start/End: Complemental strand, 52124 - 52054
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||| ||| ||||||||||||| | | ||||||||||||||||||||| ||||||  || |||||||||||    
T  52124 ttaagaaatctataaatagaattgt-tgtcttagaaatataaattgtcattttttaccaaataataattaca 52054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 862 - 933
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||||||| ||||||||||||||||| |||| |||||||||| | ||| |||||||||| |||||||||||    
T  862 ttaaggaatctataaatagaattttctgtcttggaaatataaactatcattttttattaaataataattaca 933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 467
Target Start/End: Original strand, 924 - 975
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaa 467  Q
    |||||||||||||| || ||||||||| ||||||||||| ||||||||||||    
T  924 aataattacattacattctaataaaaatttactttatttagtgtttaaccaa 975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 21809802 - 21809876
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattac 401  Q
    |||| ||||| ||| ||||||||||||| | | ||||||||||||||||||||||||||||| |||||||||||||    
T  21809802 actggttaagaaatctataaatagaattgt-tgtcttagaaatataaattgtcactttttatcaagtaataattac 21809876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 497
Target Start/End: Complemental strand, 17506317 - 17506233
Alignment:
Q  416 aataattacattactttttaata--aaaacttactttatttggtgtttaaccaatgcccgag-ggcactggttaacattctcctt 497  Q
    |||||||||||||||||||||||  |||| ||||||  |||||||  ||||||||||||||| ||||| ||||||||||||||||    
T  17506317 aataattacattactttttaataaaaaaaattacttcttttggtgcctaaccaatgcccgagaggcaccggttaacattctcctt 17506233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 470
Target Start/End: Original strand, 21809868 - 21809922
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc 470  Q
    ||||||||| ||||||||||||||||||||| ||||||| | | |||||||||||    
T  21809868 aataattacgttactttttaataaaaacttattttatttagcgcttaaccaatgc 21809922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 402
Target Start/End: Complemental strand, 17506412 - 17506308
Alignment:
Q  297 tgggtcttgttaacagatgctcctgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaata 396  Q
    ||||||||||||||   |||||| |||  |||| ||||| ||| |||||||| |||||  | | || |||||||||| ||||||||||||| ||||||||    
T  17506412 tgggtcttgttaaccagtgctccggaggcactggttaagaaatctataaatataattta-tattttggaaatataaactgtcactttttatcaagtaata 17506314  T
Q  397 attaca 402  Q
    ||||||    
T  17506313 attaca 17506308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 4803206 - 4803150
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgccc 472  Q
    |||||||||||||||||||| |||||| ||||||  ||||||| |||||| ||||||    
T  4803206 aataattacattactttttagtaaaaatttacttcttttggtgcttaaccgatgccc 4803150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 488
Target Start/End: Complemental strand, 10008244 - 10008171
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttgg-tgtttaaccaatgcccgagggcactggttaac 488  Q
    ||||||||||  ||||||||||||||||||||||  ||||| || |||||||||| |  ||||||||| |||||    
T  10008244 aataattacaccactttttaataaaaacttacttcttttggttgcttaaccaatgtcttagggcactgtttaac 10008171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 402
Target Start/End: Original strand, 1112 - 1176
Alignment:
Q  337 aatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    ||||||||||||||||||| | ||||  ||||||||| ||||||||||||||||||||||||||||    
T  1112 aatttataaatagaatttttt-tcttgaaaatataaactgtcactttttattaagtaataattaca 1176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 1167 - 1219
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 468  Q
    |||||||||||||||||||||||||| |||| |||||||| |  |||||||||    
T  1167 aataattacattactttttaataaaagcttattttatttgattcttaaccaat 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 22486 - 22567
Alignment:
Q  416 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcc-cgagggcactggttaacattctcct 496  Q
    ||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||| || ||| |||  |||||||||||||    
T  22486 aataattacattactctttaataaaaacttacttcttttggtgcttaaccaatgcctcgggggtactttttaacattctcct 22567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 22420 - 22495
Alignment:
Q  326 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||||||||||||| |||||||| || ||| | | || ||||||||||  |||||||||||| || |||||||||||    
T  22420 actgattaaggaatctataaatataacttt-tgtgttggaaatataaaccgtcactttttatcaaataataattaca 22495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 387
Target Start/End: Original strand, 1272 - 1327
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttat 387  Q
    ||||||||| |||||||||||||| || |||| |||||||||| |||||||||||||    
T  1272 ttaaggaatctataaatagaattt-ctgtcttggaaatataaactgtcactttttat 1327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 449
Target Start/End: Original strand, 1344 - 1377
Alignment:
Q  416 aataattacattactttttaataaaaacttactt 449  Q
    |||||||||||| |||||||||||||||||||||    
T  1344 aataattacatttctttttaataaaaacttactt 1377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 402
Target Start/End: Complemental strand, 51758 - 51688
Alignment:
Q  331 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 402  Q
    |||||||||||| ||||| |||||| | |||| |||||||||| ||| |||||| |||||||||| ||||||    
T  51758 ttaaggaatttacaaataaaatttt-tgtctttgaaatataaaatgttacttttgattaagtaatgattaca 51688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 355
Target Start/End: Original strand, 15359 - 15391
Alignment:
Q  323 gatactgattaaggaatttataaatagaatttt 355  Q
    |||| ||||||||||||||||||||||||||||    
T  15359 gataatgattaaggaatttataaatagaatttt 15391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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