View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_40 (Length: 523)
Name: NF1199_low_40
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 28 - 450
Target Start/End: Original strand, 1712166 - 1712595
Alignment:
| Q |
28 |
cagtacccaatttggatataagtccatcattgtctggttttagatatgatcatgtgatcaatgcaaacaaaaataaatttggaaccaatctcaatataca |
127 |
Q |
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| T |
1712166 |
cagtacccaatttggatataagtccatcattgtctggttttagatatgatcatgtgatcaatgcaagcaaaaataaatttggaaccaatctcaatataca |
1712265 |
T |
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| Q |
128 |
tatctttagagaataatagggttatagttctttatgttattccaaaagttagaggtataaaatatagaaatgttgtttaacaacatttagggttatttgt |
227 |
Q |
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| T |
1712266 |
tatctttagagaataatagggttatagttctttatgttattccaaaagttagaggtataaaatatagaaatgttgtttaacaacatttagggttatttgt |
1712365 |
T |
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| Q |
228 |
gacgagnnnnnnnnttgaattcttatgtatattcattatgtgagaggtaaaagtgattctaggattataaaattgatgttgacatgttattttggatgct |
327 |
Q |
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| T |
1712366 |
gacgag-aaaaaaattgaattcttatgtatattcactatgtgagaggtaaaagtgattctaggattataaaattgatgttgacatgttattttggatgct |
1712464 |
T |
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| Q |
328 |
tttgaagataattgtttttgtctaaatagtaggttttaatttgaagttgagataaaacttgtctcaaaataaaaattagtttcaaacctttttaac---- |
423 |
Q |
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| T |
1712465 |
tttgaagataattgtttttgtctaaatagtaggttttaatttgaagttgagataaaacttgtctcaaaataaaaattagtttcaaacctttttaacaact |
1712564 |
T |
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| Q |
424 |
----ttataaattcattattcaactaacttg |
450 |
Q |
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| T |
1712565 |
gtttttataaattcattattcaactaacttg |
1712595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 512
Target Start/End: Original strand, 1712610 - 1712645
Alignment:
| Q |
477 |
gttacgttgccttgattttatatttgttggcttcat |
512 |
Q |
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| T |
1712610 |
gttacgttgccttgattttatagttgttggcttcat |
1712645 |
T |
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