View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_47 (Length: 510)

Name: NF1199_low_47
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_47
NF1199_low_47
[»] chr6 (1 HSPs)
chr6 (13-388)||(13327140-13327516)
[»] chr4 (9 HSPs)
chr4 (20-410)||(33832391-33832781)
chr4 (20-410)||(37918998-37919388)
chr4 (20-369)||(46595886-46596235)
chr4 (20-348)||(22504832-22505160)
chr4 (32-294)||(37074678-37074940)
chr4 (35-369)||(50960320-50960657)
chr4 (20-74)||(27465783-27465837)
chr4 (38-75)||(27517606-27517643)
chr4 (20-74)||(27472858-27472912)
[»] chr8 (3 HSPs)
chr8 (21-408)||(36998467-36998854)
chr8 (22-348)||(43734583-43734909)
chr8 (244-348)||(6575214-6575318)
[»] chr3 (2 HSPs)
chr3 (32-348)||(36498386-36498702)
chr3 (231-348)||(35002348-35002465)
[»] chr7 (6 HSPs)
chr7 (32-336)||(42359446-42359750)
chr7 (32-369)||(7926866-7927203)
chr7 (32-303)||(45184570-45184838)
chr7 (16-348)||(6998377-6998709)
chr7 (104-348)||(44265566-44265809)
chr7 (36-88)||(44265491-44265543)
[»] chr2 (2 HSPs)
chr2 (20-348)||(38503899-38504227)
chr2 (206-337)||(32665509-32665640)
[»] chr5 (2 HSPs)
chr5 (21-285)||(19285-19549)
chr5 (242-313)||(28122947-28123019)
[»] scaffold1290 (1 HSPs)
scaffold1290 (214-303)||(2064-2153)
[»] scaffold0175 (1 HSPs)
scaffold0175 (244-348)||(32009-32113)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 388
Target Start/End: Original strand, 13327140 - 13327516
Alignment:
Q  13 aatatggcgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnn-gagttgaa 111  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||        ||||||||    
T  13327140 aatatgacgatgttttcgctcagcgacaccattttgttgtggtgtgtgtggacaactagactgatgtgtgataccataagaaataaaaaaaagagttgaa 13327239  T
Q  112 ttgtgcataaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcacca 211  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13327240 ttgtgcataaaaatattttttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacataaagtcgtaaatgcacca 13327339  T
Q  212 cataattatgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacat 311  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13327340 aataattatgaacgatccttcaataaggttatccaagtccatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacat 13327439  T
Q  312 gaataggaccccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagat 388  Q
    || ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13327440 gattaggaccccaaatatcataatggaaaatatcaaaagcatgtttggatcttttatttgtctttttgtgaagagat 13327516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 410
Target Start/End: Complemental strand, 33832781 - 33832391
Alignment:
Q  20 cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcat 119  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||||       |||||||||||||||     
T  33832781 cgatgtttccgctcagctaaaccattttgttgcggtgtgtgcggacaactagactgatgtatgataccatgagaaatcaaaaaggagttgaattgtgcag 33832682  T
Q  120 aaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataatta 219  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| | ||||     
T  33832681 aaaagtattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctctaaacaaaaagtcttaaatgcaccaaaaaattc 33832582  T
Q  220 tgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaatagga 319  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||  | |||||||||||| ||||||||||||||||||| || ||  |||||    
T  33832581 tgaacgatccttcaataaggttatccaagtacatcgcgagaaatcatcgataaatgtaacataatacctgtatcctaaattagagggaacgtggctagga 33832482  T
Q  320 ccccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagatgtccgaacatgtttgccaagct 410  Q
    ||||||||||||||||| |||||||| || ||||| ||||||||||||||     | ||||||| ||||||| ||||||||||||||||||    
T  33832481 ccccaaatatcagaatgcacaatatcgaaggcatgcttggatcttttattgacactattgtgaaaagatgtctgaacatgtttgccaagct 33832391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 410
Target Start/End: Original strand, 37918998 - 37919388
Alignment:
Q  20 cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcat 119  Q
    ||||||||| ||||||| |||||||||||||| |||||| ||||| ||| |||||||||| | ||||||| ||||||       |||||||||| ||||     
T  37918998 cgatgtttctgctcagctacaccattttgttgcggtgtgcgcggataacgagactgatgtatgataccatgagaaataaaaaaggagttgaattatgcaa 37919097  T
Q  120 aaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataatta 219  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| | || |     
T  37919098 aaaagtattctttggcattgtgacttctcaaaactttgattgttttcccaaattgagtctttatctctaaacaaaaagtcttaaatgcaccaaaaaaatc 37919197  T
Q  220 tgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaatagga 319  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||  | |||||||||||| ||||||||||||||||| | ||  |  || ||    
T  37919198 tgaacaatccttcaataaggttatccaagtacatcgcgagaaatcatcgataaatgtaacataatacctgtatcctaaattagagagaacgcggctacga 37919297  T
Q  320 ccccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagatgtccgaacatgtttgccaagct 410  Q
    ||||||||||||||||| |||||||| || ||||| || |||||||||||     | ||||||| ||||||| ||||||||||||||||||    
T  37919298 ccccaaatatcagaatgcacaatatcgaaggcatgcttcgatcttttattgacactattgtgaaaagatgtctgaacatgtttgccaagct 37919388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 46595886 - 46596235
Alignment:
Q  20 cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcat 119  Q
    ||||||||||  |||| ||| |||||||||||||||||||| |||||||| || |||||| | ||||||  ||||         ||||||||| |||||     
T  46595886 cgatgtttcctttcagtgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcag 46595985  T
Q  120 aaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataatta 219  Q
    ||||||||||||| ||||||||||| | ||||| |   |||  ||| ||||||||  ||||||||| ||||||||| |||  ||| |||||| ||||||     
T  46595986 aaaaatattcttttgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtctgaaaggcaccaaataattg 46596085  T
Q  220 tgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaatagga 319  Q
    |||||| ||||||| ||| || ||||| || ||||  || |||||||||||| |||| ||||||||  | ||||| ||| ||||   |||  || |||||    
T  46596086 tgaacggtccttcagtaaagtgatccaggtgcatctagaaaaatcatcgatgaaagtgacataatatctatatcccaaagtagacatcacccgactagga 46596185  T
Q  320 ccccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatt 369  Q
    ||||| | ||||||||| ||||||||||| | |   ||||||||||||||    
T  46596186 ccccacacatcagaatgaacaatatcaaagggagacttggatcttttatt 46596235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 22504832 - 22505160
Alignment:
Q  20 cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcat 119  Q
    ||||||||||  ||||| || |||||||||||||||||||| |||||||| || |||||| | ||||||  ||||         ||||||||| |||||     
T  22504832 cgatgtttcctttcagcaacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcag 22504931  T
Q  120 aaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataatta 219  Q
    ||||||||||||| |||||||||||   ||||| |   ||| |||| ||||||||  ||| ||||| ||||||||| |||  ||| |||||| ||||||     
T  22504932 aaaaatattcttttgcattgtcactctacaaaattcgaattatttttccaaattggttctatatctctgaacaaaatgtctgaaaggcaccaaataattg 22505031  T
Q  220 tgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaatagga 319  Q
    |||||| ||||||| ||| || ||||| || ||||  || |||||||||||| |||| ||||||||  | ||||| ||| ||||   |||  || |||||    
T  22505032 tgaacggtccttcagtaaagtgatccaggtgcatctagaaaaatcatcgatgaaagtgacataatatctatatcccaaagtagacatcacccgactagga 22505131  T
Q  320 ccccaaatatcagaatggacaatatcaaa 348  Q
    ||||| | ||||||||| |||||||||||    
T  22505132 ccccacacatcagaatgaacaatatcaaa 22505160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 294
Target Start/End: Complemental strand, 37074940 - 37074678
Alignment:
Q  32 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 131  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||| ||||||||| ||||         ||||||||   || | ||||||||||||    
T  37074940 tcagcgacaccattttgttgcggtgtgtgaggacagctggactgatgtataataccatgagaagccataaaggagttgaacgatgtagaaaaatattctt 37074841  T
Q  132 tggcattgtcacttctcaaaactttga-ttgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcct 230  Q
    ||||||||||||| ||  ||| || || ||||||| |||||||  |||||||||| ||||||||| ||   |||  ||||| |||||| | |||||||||    
T  37074840 tggcattgtcact-ctgtaaaattcgaattgttttaccaaatttggtctttatctctgaacaaaacgtttgaaagacaccaaataattctaaacgatcct 37074742  T
Q  231 tcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcc 294  Q
    |||||||||| ||||| || ||||  ||||||||||| ||| |||| | |||||| ||||||||    
T  37074741 tcaataaggtgatccaggtgcatctagagaaatcatcaatgaaagtgatataatatttgtatcc 37074678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 369
Target Start/End: Complemental strand, 50960657 - 50960320
Alignment:
Q  35 gcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaat--attcttt 132  Q
    ||||| |||||||||||||||||||| |||||||| || |||||| | ||||||  ||||         ||||||||| ||||| |||||   |||||||    
T  50960657 gcgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcagaaaaaataattcttt 50960558  T
Q  133 ggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaa-agtcgtaaatgcaccacataattatgaacgatcctt 231  Q
     ||||||||||| | ||||| |   |||  ||| ||||||||  ||||||||| ||||||||| ||||  ||| |||||| |||||| |||||| |||||    
T  50960557 tgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatagtctgaaaggcaccaaataattgtgaacggtcctt 50960458  T
Q  232 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca 331  Q
    ||  || || ||||| || ||||  || |||||||| ||| |||| |||| |||  | ||||| ||| ||||   |||  || |||||||||| | ||||    
T  50960457 caggaaagtgatccaggtgcatctagaaaaatcatcaatgaaagtgacatgatatctatatcccaaagtagacaacacccgactaggaccccacacatca 50960358  T
Q  332 gaatggacaatatcaaaagcatgtttggatcttttatt 369  Q
    ||||| ||||||||||| | |   ||||||||||||||    
T  50960357 gaatgaacaatatcaaagggagacttggatcttttatt 50960320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 27465783 - 27465837
Alignment:
Q  20 cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagact 74  Q
    ||||||||||||||||||| || |||||||||| ||||||| |||||||||||||    
T  27465783 cgatgtttccgctcagcgatactattttgttgtcgtgtgtgtggacaactagact 27465837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 27517643 - 27517606
Alignment:
Q  38 acaccattttgttgtggtgtgtgcggacaactagactg 75  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  27517643 acaccattttgatgtggtgtgtgcggacaactagactg 27517606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 27472858 - 27472912
Alignment:
Q  20 cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagact 74  Q
    |||| |||| ||||||| |||| |||||||||| |||||||| ||||||||||||    
T  27472858 cgatatttctgctcagcaacactattttgttgtcgtgtgtgcagacaactagact 27472912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 21 - 408
Target Start/End: Complemental strand, 36998854 - 36998467
Alignment:
Q  21 gatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcata 120  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||||       ||||| ||||||| | |    
T  36998854 gatgtttccgctcagcgacaccattttgttgcggtgtgtgtggacaactagactgatgtgtgataccatgagaaatcaaaaaggagttaaattgtgtaga 36998755  T
Q  121 aaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattat 220  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| | ||||||||||| ||||||||| | |  ||| |    
T  36998754 aaagtattctttggcattgtcacttctcaaaactttgattgttttccccaactgagtctttatctctaaacaaaaagtcttaaatgcactagactattct 36998655  T
Q  221 gaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggac 320  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||||   || ||||||    
T  36998654 gaactatccttcaataaggttatccaagtacatcgcgagaaatcatcgatgaaagtaacataatacctgtatcctaaattagaaggcatgcgactaggac 36998555  T
Q  321 cccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagatgtccgaacatgtttgccaag 408  Q
    ||||||||||| |||| |||||||| || ||||| || |||||||||||     || | |||| ||||||||||||||||||||||||    
T  36998554 cccaaatatcaaaatgcacaatatcgaaggcatgcttagatcttttattgacactgctatgaaaagatgtccgaacatgtttgccaag 36998467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 348
Target Start/End: Complemental strand, 43734909 - 43734583
Alignment:
Q  22 atgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataa 121  Q
    ||||||||  |||||||| |||||||||||||||||||| |||||||| || |||||| | ||||||  ||||         ||||||||| ||||| ||    
T  43734909 atgtttcctttcagcgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcaaaa 43734810  T
Q  122 aaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatg 221  Q
    ||||||||||| ||||||||||| | ||||| |   |||  ||| ||||||||  ||||||||| ||||||||| |||  ||| |||||| |||||| ||    
T  43734809 aaatattcttttgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtcagaaaggcaccaaataattgtg 43734710  T
Q  222 aacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggacc 321  Q
    |||| ||||||| |||  | ||||| || ||||  || ||| |||| ||| |||| ||||||||  | ||||| ||| ||||   |||  || |||||||    
T  43734709 aacggtccttcagtaaaatgatccaggtgcatctagaaaaaccatcaatgaaagtgacataatatctttatcccaaagtagacatcacccgactaggacc 43734610  T
Q  322 ccaaatatcagaatggacaatatcaaa 348  Q
    ||| | ||||||||| |||||||||||    
T  43734609 ccacacatcagaatgaacaatatcaaa 43734583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 6575214 - 6575318
Alignment:
Q  244 ccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatcagaatggacaata 343  Q
    ||||||||||| |||||||||||| ||  ||||||||||||||||||| |||||  |||| || ||| || |||||||||||||||||||||| |||| |    
T  6575214 ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgactaggaccccaaatatcagaatgaacaaca 6575313  T
Q  344 tcaaa 348  Q
    |||||    
T  6575314 tcaaa 6575318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 32 - 348
Target Start/End: Complemental strand, 36498702 - 36498386
Alignment:
Q  32 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 131  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| ||||         |||||||||  || | ||||||||||||    
T  36498702 tcagcgacaccattttgttgcggtgtgtgaggacaactggactgatgtataataccatgagaagccatgaaggagttgaatgatgtagaaaaatattctt 36498603  T
Q  132 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 231  Q
    | ||||||||||| |  |||| |   |||||||| ||||| || |||||||||| ||||||||| ||   |||||||||| |||||| ||||||||||||    
T  36498602 ttgcattgtcactccgtaaaattcgaattgttttaccaaactgggtctttatctctgaacaaaacgtttgaaatgcaccaaataattctgaacgatcctt 36498503  T
Q  232 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca 331  Q
     |||||||| |||||||| ||||  ||||||||||| ||| |||| |||||||| |||||||| ||| |||| | |||| || |||||||||||| ||||    
T  36498502 taataaggtgatccaagtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacgacacacgactaggaccccaaacatca 36498403  T
Q  332 gaatggacaatatcaaa 348  Q
    |||||||  ||||||||    
T  36498402 gaatggatgatatcaaa 36498386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 348
Target Start/End: Original strand, 35002348 - 35002465
Alignment:
Q  231 tcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatc 330  Q
    ||||||| || |||||||| ||||  ||||||||||| ||| || ||||||||||  |||||||||||| | |||| |||||| |||||||||||| |||    
T  35002348 tcaataaagtgatccaagtgcatctcgagaaatcatcaatgaaactaacataatatctgtatcctaaataatagggtacatgactaggaccccaaacatc 35002447  T
Q  331 agaatggacaatatcaaa 348  Q
    | |||| |||||||||||    
T  35002448 ataatgaacaatatcaaa 35002465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 32 - 336
Target Start/End: Original strand, 42359446 - 42359750
Alignment:
Q  32 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 131  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| ||||         |||||||||  || | ||||||||| ||    
T  42359446 tcagcgacaccattttgttgcggtgtgtgaggacaactggactgatgtataataccatgagaagccataaaggagttgaatgatgtagaaaaatattatt 42359545  T
Q  132 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 231  Q
    ||||||||||||| |  |||| |   |||||||| |||||||| |||||||||||||||||||| ||   ||| |||||| |||||||||||||||||||    
T  42359546 tggcattgtcactccgtaaaattcgaattgttttaccaaattgggtctttatctatgaacaaaacgtttgaaaggcaccaaataattatgaacgatcctt 42359645  T
Q  232 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca 331  Q
    ||||||||| ||||| || ||||  ||||||||||| ||| |||| |||||||| |||||||| ||| |||| | |||  || | |||||||||| ||||    
T  42359646 caataaggtgatccaggtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacgacacgcgactgggaccccaaacatca 42359745  T
Q  332 gaatg 336  Q
    |||||    
T  42359746 gaatg 42359750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 32 - 369
Target Start/End: Complemental strand, 7927203 - 7926866
Alignment:
Q  32 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 131  Q
    |||||||| ||||||||||||||| |||| ||||||||||| |||||| | ||||||  ||||         ||||||||| ||||| ||||||||||||    
T  7927203 tcagcgacgccattttgttgtggtttgtggggacaactagattgatgtatgataccaagagaagccatgaaagagttgaatggtgcagaaaaatattctt 7927104  T
Q  132 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 231  Q
    | |||||||||||   ||||| |   |||  ||| ||||||||  ||||||||| ||||||||| |||  ||| |||||| |||||| |||||| |||||    
T  7927103 ttgcattgtcactctgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtctgaaaggcaccaaataattgtgaacggtcctt 7927004  T
Q  232 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca 331  Q
    || ||| || |||||  | ||||  || |||||||| ||| |||| ||||||||  | ||||| ||| ||||  ||||  || |||||||||| | ||||    
T  7927003 cagtaaagtgatccagatgcatctagaaaaatcatcaatgaaagtgacataatatctatatcccaaagtagacagcacccgactaggaccccatacatca 7926904  T
Q  332 gaatggacaatatcaaaagcatgtttggatcttttatt 369  Q
    ||||| ||||||||||| | |   ||||||||||||||    
T  7926903 gaatgaacaatatcaaagggagacttggatcttttatt 7926866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 32 - 303
Target Start/End: Original strand, 45184570 - 45184838
Alignment:
Q  32 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 131  Q
    |||| |||||||||||||||  ||||||| ||||| || ||||||||| ||||||||| ||||         |||||||||  || | |||||||||       
T  45184570 tcagtgacaccattttgttgcagtgtgtgaggacagctggactgatgtataataccatgagaagccataaaggagttgaatgatgtagaaaaatatt--- 45184666  T
Q  132 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 231  Q
    ||||||| ||||| |  |||| |   |||||||| ||| |||| |||||||||| ||||||||| ||   ||| |||||| |||||||||||||||||||    
T  45184667 tggcattctcactccgtaaaattcgaattgttttaccagattgggtctttatctctgaacaaaacgtttgaaaggcaccaaataattatgaacgatcctt 45184766  T
Q  232 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattaga 303  Q
    ||||||||| ||||| || ||||  ||||||||||| ||| |||| |||||||| |||||||| ||| ||||    
T  45184767 caataaggtgatccaggtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtaga 45184838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 6998709 - 6998377
Alignment:
Q  16 atggcgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgt 115  Q
    ||||||||||||||  |||||||| |||||||||||||||||||| |||| ||| || |||||| | ||||||  ||||         ||||||||| ||    
T  6998709 atggcgatgtttcctttcagcgacgccattttgttgtggtgtgtggggacgactcgattgatgtatgataccaagagaagccatgaaagagttgaatggt 6998610  T
Q  116 gcataaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacata 215  Q
    ||| ||||||||||||| ||||| |||||    |||| |   |||  ||| ||||||||  ||||||||| | ||||||| |||  ||| |||||| |||    
T  6998609 gcagaaaaatattcttttgcattttcactctggaaaattcaaattccttttccaaattggttctttatctctaaacaaaatgtctgaaaggcaccaaata 6998510  T
Q  216 attatgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaat 315  Q
    ||| |||||| ||||||| ||| || ||||| || ||||  || |||||||| ||| |||| |||||||| |||||||| ||| ||||   |||  || |    
T  6998509 attgtgaacggtccttcagtaaagtgatccaggtgcatctagaaaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacatcacccgact 6998410  T
Q  316 aggaccccaaatatcagaatggacaatatcaaa 348  Q
    ||||||||| | ||||||||| |||||||||||    
T  6998409 aggaccccacacatcagaatgaacaatatcaaa 6998377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 348
Target Start/End: Original strand, 44265566 - 44265809
Alignment:
Q  104 gagttgaattgtgcataaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaa 203  Q
    ||||||||| ||||   |||||||||||| ||||||||||| | ||||| |   |||  ||| ||||||||  |||| |||| | ||||||| |||  ||    
T  44265566 gagttgaatggtgctgtaaaatattcttttgcattgtcactccgcaaaattcgaattccttttccaaattggttctt-atctctaaacaaaatgtctgaa 44265664  T
Q  204 atgcaccacataattatgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattaga 303  Q
    | |||||| |||||| |||||| ||||||| ||| || |||||| | ||||  || |||||||| ||| |||| ||||||||  | ||||| ||| ||||    
T  44265665 aggcaccaaataattgtgaacggtccttcagtaaagtgatccaaatgcatctagaaaaatcatcaatgaaagtgacataatatctatatcccaaagtaga 44265764  T
Q  304 gggcacatgaataggaccccaaatatcagaatggacaatatcaaa 348  Q
       |||  || |||||||||| | || |||||| |||||||||||    
T  44265765 caacacccgactaggaccccacacattagaatgaacaatatcaaa 44265809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 44265491 - 44265543
Alignment:
Q  36 cgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaatacca 88  Q
    |||| |||||||||||||||||||| |||||||| || |||||| | ||||||    
T  44265491 cgacgccattttgttgtggtgtgtggggacaactggattgatgtatgatacca 44265543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 348
Target Start/End: Complemental strand, 38504227 - 38503899
Alignment:
Q  20 cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcat 119  Q
    ||||||||||  |||||||| |||||||||||||||||||| |||||||| || |||||| | ||||||  ||||         ||||||||| |||||     
T  38504227 cgatgtttcctttcagcgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcag 38504128  T
Q  120 aaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataatta 219  Q
    ||||||||||||| ||||||||||| | ||||| |   |||  ||| ||||||||  ||||||||| ||||||||| |||  |||  ||||| ||||||     
T  38504127 aaaaatattcttttgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtctgaaagacaccaaataattg 38504028  T
Q  220 tgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaatagga 319  Q
    |||||| ||||||| ||| || ||||| || ||||  || |||||||| ||| |||| ||||||||  | ||||| ||| ||||   |||  || |||||    
T  38504027 tgaacggtccttcagtaaagtgatccaggtgcatctagaaaaatcatcaatgaaagtgacataatatctatatcccaaagtagacatcacccgactagga 38503928  T
Q  320 ccccaaatatcagaatggacaatatcaaa 348  Q
    ||||| | ||||||||| |||||||||||    
T  38503927 ccccacacatcagaatgaacaatatcaaa 38503899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 337
Target Start/End: Original strand, 32665509 - 32665640
Alignment:
Q  206 gcaccacataattatgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagg 305  Q
    |||||| |||||| |||| |||| ||||||||||| ||||| || ||||  |||||||||||  || |||| |||||||| |||||||| ||| |||| |    
T  32665509 gcaccaaataattctgaatgatctttcaataaggtgatccaggtgcatctagagaaatcatcattgaaagtgacataatatttgtatcccaaagtagacg 32665608  T
Q  306 gcacatgaataggaccccaaatatcagaatgg 337  Q
     |||| || |||||||||||| ||||||||||    
T  32665609 acacacgactaggaccccaaacatcagaatgg 32665640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 19549 - 19285
Alignment:
Q  21 gatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcata 120  Q
    |||||||||  |||||||| |||||||||||||||||||| |||||||| || |||||| | |||||| |||||         ||||||||| ||||| |    
T  19549 gatgtttcctttcagcgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaaaagaagccatgaaagagttgaatggtgcaga 19450  T
Q  121 aaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattat 220  Q
    |||||||||||| ||||||||||| | ||||| |   |||  ||| ||||||||  ||||||||| ||||||||| |||  ||| |||||| |||| |      
T  19449 aaaatattcttttgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtctgaaaggcaccaaataaatga 19350  T
Q  221 gaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataata 285  Q
    ||||| ||||||| ||| || |||||  | ||||  || |||||||| ||| |||| ||||||||    
T  19349 gaacggtccttcagtaaagtgatccagatgcatctagaaaaatcatcaatgaaagtgacataata 19285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 28123019 - 28122947
Alignment:
Q  242 atccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcct-aaattagagggcacatga 313  Q
    |||||||| |||| ||||| |||||| | | || ||||||| |||||||||||| |||||||| |||||||||    
T  28123019 atccaagtgcatcttgagagatcatcaaggaaattaacatagtacttgtatcctgaaattagaaggcacatga 28122947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1290 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold1290
Description:

Target: scaffold1290; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 2153 - 2064
Alignment:
Q  214 taattatgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattaga 303  Q
    ||||||||||||||||||||||||||| ||||| || ||||  ||||||||||| ||| |||| |||||||| |||||||| ||| ||||    
T  2153 taattatgaacgatccttcaataaggtgatccaggtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtaga 2064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 32113 - 32009
Alignment:
Q  244 ccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatcagaatggacaata 343  Q
    ||||||||||| |||||||||||| ||  ||||||||||||||||||| |||||  |||| || | | || |||||||||||| |||| |||| |||| |    
T  32113 ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaaaacgactaggaccccaaacatcaaaatgaacaaca 32014  T
Q  344 tcaaa 348  Q
    |||||    
T  32013 tcaaa 32009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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