View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_48 (Length: 509)
Name: NF1199_low_48
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 38 - 440
Target Start/End: Original strand, 35498618 - 35499023
Alignment:
| Q |
38 |
ttatatcaaatatagattaggcacctcctcgtcactttcatcttcaccagcttcatttctgatgcgctcaagatgtggatcaacagcatc---atcatca |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35498618 |
ttatatcaaatatagattaggcacctcctcgtcactttcatcttcaccagcttcatttctgatgcgctcaagatgtggatcaacagcatcatcatcatca |
35498717 |
T |
|
| Q |
135 |
ccctcaagaaccttagccacaccagtagttggttgggcatctcctaaattcataattttcaagccctttgaactgcatgttcaggtaaggaatgagttgt |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35498718 |
ccctcaagaaccttagccacaccagtagttggttgggcatctcctaaattcataattttcaagccctttgaactgcatgttcaggtaaggaatgagttgt |
35498817 |
T |
|
| Q |
235 |
ttatatgacaaacaactagttgccaagtaaaatttggcaatgaggtaacatttacctgataaaaccatacaaattgtggtactcgtttctctgaatatta |
334 |
Q |
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| T |
35498818 |
ttatatgacaaacaactagttgccaagtaaaatttggcaatgaggtaacatttacctgataaaaccatacaaattgtggtactcgtttctctgaatatta |
35498917 |
T |
|
| Q |
335 |
cgaaagaggtgctcttggtcagattttagtctgataagaaggtcaaaataatgcatatttgacccaccagcagcatgtcgctcaaattccacatagtcaa |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35498918 |
cgaaagaggtgctcttggtcagattttagtctgataagaaggtcaaaataatgcatatttgacccaccagcagcatgtcgctcaaactccacatagtcaa |
35499017 |
T |
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| Q |
435 |
tctagt |
440 |
Q |
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|||||| |
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| T |
35499018 |
tctagt |
35499023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 51 - 441
Target Start/End: Complemental strand, 7072971 - 7072580
Alignment:
| Q |
51 |
agattaggcacctcctcgtcactttcatcttcaccagcttcatttctgatgcgctcaagatgtggatcaacagcatcatcatcacc---ctcaagaacct |
147 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||||||||||| | |||||| |||| |
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| T |
7072971 |
agattaggcacctcctcgtcactttcatctccaccagcttcatttctgatgcgctcgagatgtggatcgacggcatcatcatcatcattctcaagcacct |
7072872 |
T |
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| Q |
148 |
tagccacaccagtagttggttgggcatctcctaaattcataattttcaagccctttgaactgcatgttcaggtaaggaatgagttgtttatatgacaaac |
247 |
Q |
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| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| | | ||| ||| || | | |||||| |
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| T |
7072871 |
tggccacaccaacagttggttgggcatcagctaaattcataattttcaagcccttagaactgcatgtgcaggacaaaagtgaattgcttgtgtaacaaac |
7072772 |
T |
|
| Q |
248 |
aactagttgccaagtaaaatttggcaatgaggtaacatttacctgataaaaccatacaaattgtggtactcgtttctctgaatattacgaaagaggtgct |
347 |
Q |
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|| || || | |||| ||||||| |||| ||| |||||||||||||||||||||||||||||||| || |||||||||||||| || ||||| |||| |
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| T |
7072771 |
aaatatgtgtga--taaattttggcagtgagttaatatttacctgataaaaccatacaaattgtggtattcatttctctgaatatttcggaagagatgct |
7072674 |
T |
|
| Q |
348 |
cttggtcagattttagtctgataagaaggtcaaaataatgcatatttgacccaccagcagcatgtcgctcaaattccacatagtcaatctagta |
441 |
Q |
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|||| |||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7072673 |
cttgctcagatttgagtctgataagaaggtcaaagtaatgcatgtttgaaccaccagcagcatgtcgctcaaattccacatagtcaatctagta |
7072580 |
T |
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