View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_49 (Length: 506)
Name: NF1199_low_49
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 39 - 294
Target Start/End: Original strand, 28268063 - 28268318
Alignment:
| Q |
39 |
tgatttgtttgatctatttgcagatagtgtttttctggttagttagggtttgttttgaagatagaaatggggagaggaaagatccagataaggaggattg |
138 |
Q |
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| T |
28268063 |
tgatttttttgatctatttgcagatagtgtttttctggttagttagggtttgttttgaagatagaaatggggagaggaaagatccagataaggaggattg |
28268162 |
T |
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| Q |
139 |
ataattcgacgagcaggcaagtaactttttcgaagcgaaggaatggattgttgaagaaggcgaaggaacttgcgattttgtgtgatgctgaggttggggt |
238 |
Q |
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| T |
28268163 |
ataattcgacgagcaggcaagtaactttttcgaagcgaaggaatggattgttgaagaaggcgaaggaacttgcgattttgtgcgatgctgaggttggggt |
28268262 |
T |
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| Q |
239 |
tatgatcttctccagcactgcaaaactctatgatttcgccagcaccaggtaactag |
294 |
Q |
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| T |
28268263 |
tatgatcttctccagcactgcaaaactctatgatttcgccagcaccaggtaactag |
28268318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 368 - 470
Target Start/End: Original strand, 28268392 - 28268494
Alignment:
| Q |
368 |
gatttgcactttcaatctctatgttgattttagtatatatgtgcgtggctttaaggatatgaaagtggtttcgtttttatttctgtttttgcaatagatt |
467 |
Q |
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| T |
28268392 |
gatttgcactttcaatctctatgttgatttgagtatatatgtgtgtgactttaaggatatgaaagtggtttcgtttttatttctgtttttgcaatagatt |
28268491 |
T |
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| Q |
468 |
ggt |
470 |
Q |
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| T |
28268492 |
ggt |
28268494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19766807 - 19766765
Alignment:
| Q |
1 |
cgccaactatgaccttattctcgtcagagacctaaatctgatt |
43 |
Q |
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| T |
19766807 |
cgccaactatgaccttattctcgtcagagacctaaatctgatt |
19766765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 17682553 - 17682516
Alignment:
| Q |
4 |
caactatgaccttattctcgtcagagacctaaatctga |
41 |
Q |
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| T |
17682553 |
caactatgaccctattctcgtcagagacccaaatctga |
17682516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 273
Target Start/End: Original strand, 2115247 - 2115388
Alignment:
| Q |
132 |
aggattgataattcgacgagcaggcaagtaactttttcgaagcgaaggaatggattgttgaagaaggcgaaggaacttgcgattttgtgtgatgctgagg |
231 |
Q |
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| T |
2115247 |
aggattgacaattcaacaagcaggcaagtgactttctcaaaaagaagaaatggattgttgaagaaagcaaaagaattatccattctttgtgatgctgaag |
2115346 |
T |
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| Q |
232 |
ttggggttatgatcttctccagcactgcaaaactctatgatt |
273 |
Q |
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| T |
2115347 |
ttggattgattgtcttttccagcactggaaagctttatgatt |
2115388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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