View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_50 (Length: 506)

Name: NF1199_low_50
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_50
NF1199_low_50
[»] chr6 (2 HSPs)
chr6 (1-498)||(1180936-1181429)
chr6 (6-122)||(1186318-1186434)
[»] chr4 (2 HSPs)
chr4 (12-173)||(49610963-49611124)
chr4 (7-100)||(10202876-10202969)
[»] chr8 (9 HSPs)
chr8 (67-244)||(5183563-5183740)
chr8 (7-178)||(6230501-6230672)
chr8 (7-340)||(5174917-5175250)
chr8 (7-180)||(5193807-5193980)
chr8 (84-182)||(1797160-1797258)
chr8 (280-343)||(5194080-5194143)
chr8 (7-178)||(5204066-5204237)
chr8 (280-343)||(6230774-6230837)
chr8 (27-249)||(5170736-5170958)
[»] chr7 (4 HSPs)
chr7 (7-113)||(8552671-8552777)
chr7 (4-113)||(5177410-5177519)
chr7 (7-113)||(8305866-8305972)
chr7 (280-343)||(5177695-5177758)


Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 1180936 - 1181429
Alignment:
Q  1 caacaaacaagtggtttcttgaattgtttcggaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaag 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1180936 caacaaacaagtggtttcttgaattgtttccgaaattcccttttcttgagagtttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaag 1181035  T
Q  101 tgttcgacttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcatttggatatagcggtttgggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1181036 tgttcgacttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcatttggatatagcggttggggt 1181135  T
Q  201 gcttcagaacctaccatatcttttttgaaaaattctagtcaactggaagcctgtattcatattgcggttgaatataaggatctttgcaacttgaggaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  1181136 gcttcagaacctaccatatcttttttgaaaaattctagtcaactggaagcccgtattcatattgcggttgaatataaggatctttgcaacttgagggaat 1181235  T
Q  301 tcgtgcaaaacattaaacctaacaatgttttgccatcactatctgtagccattggggagtcatatgtggtgagtatgaattaattaagtacttgattcat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    |||||||||||||||||||    
T  1181236 tcgtgcaaaacattaaacctaacaatgttttgccatcactatctgtagccattgcggagtcatatgtggtgagtatg----aattaagtacttgattcat 1181331  T
Q  401 tattggttaattcaatttgtatgtttagttattaatttttgtgtatacttgccccgtcatatatatgtaggatgcattggacctagttgtttcatctc 498  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1181332 tattggttaattcgatttgtatgtttagttattaatttttgtgtatacttgccccgtcatatatatgtaggatgcattgggcctagttgtttcatctc 1181429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 1186318 - 1186434
Alignment:
Q  6 aacaagtggtttcttgaattgtttcggaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttc 105  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| | |||||| |||| ||| ||| ||||||||||||||||||||    
T  1186318 aacaagtggtttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaaattcctgagaggattgatatttcaagtgttc 1186417  T
Q  106 gacttaagagattggag 122  Q
    |||||||||| ||||||    
T  1186418 gacttaagaggttggag 1186434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 49610963 - 49611124
Alignment:
Q  12 tggtttcttgaattgtttcggaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcgactta 111  Q
    ||||||||||| ||||||  |||||||||||| |||||||| ||||||||   |||||| | |||| || ||| |||| ||||||||||||||| |||||    
T  49610963 tggtttcttgatttgtttttgaaattccctttccttgagatattgaaatttgccaattgcacaatgtctgagacgattaatatttcaagtgttcaactta 49611062  T
Q  112 agagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatcta 173  Q
    ||   ||||||||    |||| |  ||||||||||||| |||| |||||| |||||||||||    
T  49611063 aggtgttggagttatctcattgccttaacttgaaggaggttaacattgatgctccaaatcta 49611124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 10202876 - 10202969
Alignment:
Q  7 acaagtggtttcttgaattgtttcggaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||| |  |||||   |||| | |||||| | |||||||||||||||||    
T  10202876 acaagtggtttcttgaattgtttccgaaattcccttttcttgagagttttattttaaattcttgtgacatgcctgaaaagattgatatttcaag 10202969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 67 - 244
Target Start/End: Original strand, 5183563 - 5183740
Alignment:
Q  67 attgtaaaatgcctaagaagattgatatttcaagtgttcgacttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctcc 166  Q
    ||||||||||| || ||| |||| ||||||||||||||| |||||||   ||| ||||     |||  ||||||||||||||| ||||||||||| ||||    
T  5183563 attgtaaaatggctgagacgattaatatttcaagtgttcaacttaaggtgttgaagttatctaattgttctaacttgaaggaggttaatattgatgctcc 5183662  T
Q  167 aaatctaatatcatttggatatagcggtttgggtgcttcagaacctaccatatcttttttgaaaaattctagtcaact 244  Q
    ||||||| |||||| || |||| ||| |   | || |||||| ||||  ||||||||||||| || ||||||||||||    
T  5183663 aaatctattatcatgtgtatattgcgatggtgttgattcagagcctattatatcttttttgacaagttctagtcaact 5183740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 6230501 - 6230672
Alignment:
Q  7 acaagtggtttcttgaattgtttcggaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 106  Q
    |||| |||||||||||| ||||| | ||||| | ||| ||||||| |||||||||  |  |||||| |||| |  ||| |||| |||||||||||||||     
T  6230501 acaaatggtttcttgaactgtttagaaaatttcgtttccttgagagtttgaaattggatgattgtacaatggccgagaggattaatatttcaagtgttca 6230600  T
Q  107 acttaagagattggagtt-tatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatc 178  Q
    |||||||   |||||||| | || |||  ||||||||||||||| ||||||||||| ||||||||||| ||||    
T  6230601 acttaaggtgttggagttatctg-attgttctaacttgaaggaggttaatattgatgctccaaatctattatc 6230672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 340
Target Start/End: Original strand, 5174917 - 5175250
Alignment:
Q  7 acaagtggtttcttgaattgtttcggaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 106  Q
    |||| |||||||||||| ||||||  ||||| ||||| ||||||| |||||||||  ||||||| |  ||| |  |||||||| |||||||||||||||     
T  5174917 acaaatggtttcttgaactgtttcctaaatttcctttccttgagagtttgaaattggacaattgcactatgtccgagaagattaatatttcaagtgttca 5175016  T
Q  107 acttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcatttggatatagcggtttgggtgcttca 206  Q
    |||||||   |||||| |  |  |||  ||||||||||||||| | || |||||| | ||||||||| |||  | || |||| ||||| | |||  ||||    
T  5175017 acttaaggtgttggagctatttgattgttctaacttgaaggaggtcaacattgatgcgccaaatctattattgtgtgtatattgcggtgttggtagttca 5175116  T
Q  207 gaacctaccatatcttttttgaaaaattctagtcaactggaagcctgtattcatattgcggttgaatataaggatctttgcaacttgaggaaattcgtgc 306  Q
    || ||||  ||||| ||| | | || ||||||||||||  ||| |  |||  ||||| |  || | |||    ||||||| ||||||||| |||| ||||    
T  5175117 gagcctattatatcctttctaagaagttctagtcaactaaaagtcaatatagatattcccattcattatcgtcatctttgtaacttgagggaatttgtgc 5175216  T
Q  307 aaaacattaaacctaacaatgttttgccatcact 340  Q
    ||||||| |||||| | ||||||||| |||||||    
T  5175217 aaaacatcaaacctcaaaatgttttgacatcact 5175250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 180
Target Start/End: Original strand, 5193807 - 5193980
Alignment:
Q  7 acaagtggtttcttgaattgtttcggaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 106  Q
    |||| |||||||| ||| ||||||  ||||| ||||| ||||||| ||||||||| ||||| |||| |||| |  ||| ||||||||||||||||| ||     
T  5193807 acaaatggtttctcgaactgtttccaaaatttcctttccttgagagtttgaaattgaacaactgtacaatggccgagaggattgatatttcaagtgatca 5193906  T
Q  107 acttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcat 180  Q
    |||||||   |||| |||     |||  ||||||||||||||| | || |||||| ||||||||||| ||||||    
T  5193907 acttaaggtgttggggttatctaattgttctaacttgaaggaggtcaacattgatgctccaaatctattatcat 5193980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 1797258 - 1797160
Alignment:
Q  84 aagattgatatttcaagtgttcgacttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcattt 182  Q
    |||||| ||||||||||||||| |||||||   ||||||||    ||||  ||||||||||||||| | || |||||| ||||||||||| ||||||||    
T  1797258 aagattaatatttcaagtgttcaacttaaggtgttggagttatctcattgttctaacttgaaggaggtcaacattgatgctccaaatctattatcattt 1797160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 343
Target Start/End: Original strand, 5194080 - 5194143
Alignment:
Q  280 atctttgcaacttgaggaaattcgtgcaaaacattaaacctaacaatgttttgccatcactatc 343  Q
    ||||||| ||||||||| |||| ||||||||||| |||||| | ||||||||| |||| |||||    
T  5194080 atctttgtaacttgagggaatttgtgcaaaacatcaaacctcaaaatgttttgtcatctctatc 5194143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 5204066 - 5204237
Alignment:
Q  7 acaagtggtttcttgaattgtttcggaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 106  Q
    |||| |||||||||||| |||||   ||||| ||||| ||||||| |||||| || ||||||||||  |||    ||| |||| |||||||||||||||     
T  5204066 acaaatggtttcttgaactgttttcaaaatttcctttccttgagagtttgaagttgaacaattgtaggatgttcgagaggattaatatttcaagtgttca 5204165  T
Q  107 acttaagagattggagtttatgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatc 178  Q
    |||||||   ||||||||     |||  ||||||||||||||| | || |||||  ||||||||||| ||||    
T  5204166 acttaaggtgttggagttatctaattgttctaacttgaaggaggtcaacattgacgctccaaatctattatc 5204237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 343
Target Start/End: Original strand, 6230774 - 6230837
Alignment:
Q  280 atctttgcaacttgaggaaattcgtgcaaaacattaaacctaacaatgttttgccatcactatc 343  Q
    ||||||| ||||||||| |||| ||||||||||| |||||| | ||||||||| |||| |||||    
T  6230774 atctttgtaacttgagggaatttgtgcaaaacatcaaacctcaaaatgttttgtcatctctatc 6230837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 5170736 - 5170958
Alignment:
Q  27 tttcggaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcgacttaagagattggagttta 126  Q
    ||||| ||||||||||| |||||||  ||||||||  | ||||| |||||| |  | | |||| ||||||||||||||| |||||||   ||||||||      
T  5170736 tttcgaaaattccctttccttgagaggttgaaattgcaaaattgcaaaatgtccgaaaggattaatatttcaagtgttcaacttaaggtgttggagttat 5170835  T
Q  127 tgcattcctctaacttgaaggagcttaatattgattctccaaatctaatatcatttggatatagcggtttgggtgcttcagaacctaccatatctttttt 226  Q
      |||| || ||||||||||||| |    |||||| |||| |||||| | |||| || |||| | |||  ||||| |||| ||||||  ||||| |||||    
T  5170836 cacattgctataacttgaaggaggtcggcattgatgctcccaatctattgtcatgtgtatattgtggtaggggtgtttcaaaacctataatatccttttt 5170935  T
Q  227 gaaaaattctagtcaactggaag 249  Q
     | || |||||||||||| ||||    
T  5170936 aagaagttctagtcaactagaag 5170958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 8552777 - 8552671
Alignment:
Q  7 acaagtggtttcttgaattgtttcggaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 106  Q
    |||| ||||||||||||||||||  |||||||||||| |||||||  ||||||||   ||| || | |||| || ||| |||| |||||||||||||||     
T  8552777 acaaatggtttcttgaattgttttcgaaattccctttccttgagagattgaaatttgtcaaatgcacaatgtctgagacgattaatatttcaagtgttca 8552678  T
Q  107 acttaag 113  Q
    |||||||    
T  8552677 acttaag 8552671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 5177410 - 5177519
Alignment:
Q  4 caaacaagtggtttcttgaattgtttcggaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgt 103  Q
    ||||||| |||||||||||| ||||||  ||||| ||||| ||||||| |||| ||||  ||| ||| |  ||| || |||||||| |||||||||||||    
T  5177410 caaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcactatgtctgagaagattaatatttcaagtgt 5177509  T
Q  104 tcgacttaag 113  Q
    || |||||||    
T  5177510 tcaacttaag 5177519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 8305866 - 8305972
Alignment:
Q  7 acaagtggtttcttgaattgtttcggaaattcccttttcttgagattttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 106  Q
    |||| ||||||||||||||||||  ||||||| |||| |||||||  ||||||||   ||| || | |||| || ||| |||| |||||||||||||||     
T  8305866 acaaatggtttcttgaattgtttttgaaattcgctttccttgagagattgaaatttgtcaaatgcacaatgtctgagacgattaatatttcaagtgttca 8305965  T
Q  107 acttaag 113  Q
    |||||||    
T  8305966 acttaag 8305972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 343
Target Start/End: Original strand, 5177695 - 5177758
Alignment:
Q  280 atctttgcaacttgaggaaattcgtgcaaaacattaaacctaacaatgttttgccatcactatc 343  Q
    ||||||| ||||||||| |||| ||||||||||| |||||| | ||||||||| |||| |||||    
T  5177695 atctttgtaacttgagggaatttgtgcaaaacatcaaacctcaaaatgttttgtcatctctatc 5177758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University