View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_53 (Length: 495)
Name: NF1199_low_53
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 6083587 - 6084062
Alignment:
| Q |
1 |
cctagaagtcatgttgcattgcaagagttatctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtggggagtccttggcttctgcat |
100 |
Q |
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| T |
6083587 |
cctagaagtcatgttgcattgcaagagttatctttggcatcaatgtcttacattggcagtgatgacaatgttagctgcggggagtccttggcttctgcat |
6083686 |
T |
|
| Q |
101 |
tgatttcagaatcggagcggtttaaaagtccaaaacatttgggatcattgtcatgccaaagttttggaccttcagatataaaccttatggatgatttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6083687 |
tgatttcagaatcggagcggtttaaaagtccaaaacatttgggatcattgtcatgcaaaagttttggaccttcagatataaaccttatggatgatttcat |
6083786 |
T |
|
| Q |
201 |
tgaaatggaaaagttagcagtggtttctgtcgaaaaagccactgaaatttctcatgcttctgtagaagtaaataatgaaataattggcttctcagagact |
300 |
Q |
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| T |
6083787 |
tgaaatggaaaagttagcagtggtttctgtcgaaaaagccactgaaatttctcatgcttctgtagaagcaaataatgaaataattggcttctcagagact |
6083886 |
T |
|
| Q |
301 |
atactagatgagatcagtccattgtctgattctgatcatatctcggaattcgctgcatcgaatccggaaacatgttccaatgacatatttaagggtaata |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6083887 |
atactagatgagatcagtccattgtctgattctgatcatatctcggaattcgctgcatcgaatccggaaacatgttccagtgacatatttaagggtaata |
6083986 |
T |
|
| Q |
401 |
ttcctggttggtttcaggatgtagttagagtggtgttggaacaaaattgtgttactgattttaaccctgatgatgt |
476 |
Q |
| |
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| T |
6083987 |
ttcctggttggtttcaggatgtagttagagtggtgttggaacaaaattgtgttactgattttaaccctgatgatgt |
6084062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 31 - 261
Target Start/End: Complemental strand, 39107438 - 39107208
Alignment:
| Q |
31 |
tctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtggggagtccttggcttctgcattgatttcagaatcggagcggtttaaaagtc |
130 |
Q |
| |
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||||||||||||| |||| | ||||||||||||||||| |||||||||| || |||| |||||||||||||| ||||||||| |||| || | |||| |
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| T |
39107438 |
tctttggcatcaacgtctgatattggcagtgatgacaaggttagctgtgctgactcctcggcttctgcattgaattcagaatcagagcacttcagaagtg |
39107339 |
T |
|
| Q |
131 |
caaaacatttgggatcattgtcatgccaaagttttggaccttcagatataaaccttatggatgatttcattgaaatggaaaagttagcagtggtttctgt |
230 |
Q |
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|||||| || ||| | ||| |||| ||| ||||| ||||||| ||||| || |||||||| || | ||||||||||| ||||||||||| ||||| |
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| T |
39107338 |
gaaaacaaaaggaatcttggtcctgccgaagcattggagcttcagacataaatctcatggatgactttgtcgaaatggaaaaattagcagtggtctctgt |
39107239 |
T |
|
| Q |
231 |
cgaaaaagccactgaaatttctcatgcttct |
261 |
Q |
| |
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||||||| | ||||||| ||| ||||||| |
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|
| T |
39107238 |
tgaaaaagaccctgaaatctctggtgcttct |
39107208 |
T |
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