View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_55 (Length: 475)
Name: NF1199_low_55
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 7357518 - 7357584
Alignment:
| Q |
322 |
agctaccctctttgttaaagactgtgctggaaaaatcaccaccagtttcaactttcaattcatttcc |
388 |
Q |
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| T |
7357518 |
agctaccttctttgttaaagactctgttggaaaaatcaccaccggttttaactttcaattcatttcc |
7357584 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 7357684 - 7357731
Alignment:
| Q |
417 |
tttgtgaaggtttcttcttttgagaaactcatattccgattcctctct |
464 |
Q |
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| T |
7357684 |
tttgtgaaggtttcatcttttgagaaactcagattccgactactctct |
7357731 |
T |
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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 322 - 383
Target Start/End: Original strand, 53722426 - 53722484
Alignment:
| Q |
322 |
agctaccctctttgttaaagactgtgctggaaaaatcaccaccagtttcaactttcaattca |
383 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
53722426 |
agctaccctctttgttaaagactgtgctggaaaaat---caacagtttcaactttcaattca |
53722484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 463
Target Start/End: Original strand, 53722570 - 53722616
Alignment:
| Q |
417 |
tttgtgaaggtttcttcttttgagaaactcatattccgattcctctc |
463 |
Q |
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|||||||||||||| |||||||| ||||||| ||| ||||||||||| |
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| T |
53722570 |
tttgtgaaggtttcatcttttgataaactcagatttcgattcctctc |
53722616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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