View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_56 (Length: 471)
Name: NF1199_low_56
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 30 - 449
Target Start/End: Original strand, 40271614 - 40272033
Alignment:
| Q |
30 |
catgaatctgctaagaaattgtttgaagagattttgaagaaagatccacttcgagttgaagcttttcatggacttgtaatggcgagttctgaatcgaatg |
129 |
Q |
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| T |
40271614 |
catgaatctgctaagaaattgtttgaagagattttgaagaaagatccacttcgagttgaagcttttcatggacttgtaatggcgagttctgaatcgaatg |
40271713 |
T |
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| Q |
130 |
aacaatcggatgaacctttgaaaggattgttgaagagagttgaaaaagcaatggagttgtgcaagaaacagaagaaggtttcggatgttagggattttag |
229 |
Q |
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| T |
40271714 |
aacaatcggatgaacctttgaaaggattgttgaagagagttgaaaaagcaatggagttgtgcaagaaacagaagaaggtttcggatgttagggattttag |
40271813 |
T |
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| Q |
230 |
gttattggttgctcagattaaggtgatggaagggaatttttcagaggcgcttaaagcttatcaggatttggtgaaagaagaacctagagattttaggcct |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40271814 |
gttattggttgctcagattaaggtgatggaagggaatttttcagaggcgcttaaagcttatcaggatttggtgaaagaagaacctagagattttaggcct |
40271913 |
T |
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| Q |
330 |
tatctgtgtcagggtattatatatacattgcttagaaagaaagatgaagcggagaagcaattcgatcagttccggaagcttgtcccgaagaatcatcctt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40271914 |
tatctgtgtcagggtattatatatacattgcttagaaagaaagatgaagccgagaagcaattcgatcagttccgaaagcttgtcccgaagaatcatcctt |
40272013 |
T |
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| Q |
430 |
ataaagagtattttgatgat |
449 |
Q |
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| T |
40272014 |
ataaagagtattttgatgat |
40272033 |
T |
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