View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_64 (Length: 452)
Name: NF1199_low_64
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 30 - 441
Target Start/End: Complemental strand, 37108559 - 37108148
Alignment:
| Q |
30 |
gtacctggagtcagtgtcttcggtcaagggtatggaacagcaaagggtggttcaccaaaagcaagagttgcatcatacaaagtttgttggcctccaatta |
129 |
Q |
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| T |
37108559 |
gtacctggagtcagtgtcttcggtcaaggctatggaacagcaaagggtggttcaccaaaagcaagagttgcatcatacaaagtttgttggcctccaatta |
37108460 |
T |
|
| Q |
130 |
atggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatgatggtgttgatgtcttgtctgtgtcacttggtggctctgcttc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37108459 |
atggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatgatggtgttgatgtcttgtctgtgtcacttggtggctctgcttc |
37108360 |
T |
|
| Q |
230 |
taaccttttcaatgatagtgttgctattggatctttccatgctgctaagaaaggtattgttgttgtttgctctgctggcaatagtggaccaaatgatgct |
329 |
Q |
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| T |
37108359 |
taaccttttcaatgatagtgttgctattggatctttccatgctgctaagaaaggtattgttgttgtttgctctgctggcaatagtggaccaaatgatgct |
37108260 |
T |
|
| Q |
330 |
actgcatcaaatctagctccttggtatatcacagttggtgccagcacaatggatagagagttccctagttatgttgttcttggtaacaatttaaccttca |
429 |
Q |
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| T |
37108259 |
actgcatcaaatctagctccttggtatatcacagttggtgccagcacaatggatagagagttccctagttatgttgttcttggtaacaatttaaccttca |
37108160 |
T |
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| Q |
430 |
aggtttgtctct |
441 |
Q |
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|||||||||||| |
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| T |
37108159 |
aggtttgtctct |
37108148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 42734943 - 42735003
Alignment:
| Q |
358 |
tcacagttggtgccagcacaatggatagagagttccctagttatgttgttcttggtaacaa |
418 |
Q |
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| T |
42734943 |
tcacagttgctgcaagcacaattgatagagacttcacaagttatgttgtacttggtaacaa |
42735003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 42743567 - 42743507
Alignment:
| Q |
358 |
tcacagttggtgccagcacaatggatagagagttccctagttatgttgttcttggtaacaa |
418 |
Q |
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| T |
42743567 |
tcacagttgctgcaagcacaatagatagagatttcacaagttatgttattcttggtaacaa |
42743507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 42752926 - 42752866
Alignment:
| Q |
358 |
tcacagttggtgccagcacaatggatagagagttccctagttatgttgttcttggtaacaa |
418 |
Q |
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| T |
42752926 |
tcacagttgctgcaagcacaatagatagagatttcacaagttatgttattcttggtaacaa |
42752866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 42762548 - 42762488
Alignment:
| Q |
358 |
tcacagttggtgccagcacaatggatagagagttccctagttatgttgttcttggtaacaa |
418 |
Q |
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| T |
42762548 |
tcacagttgctgcaagcacaattgatagagatttcacaagttatgttattcttggtaacaa |
42762488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 42769426 - 42769365
Alignment:
| Q |
357 |
atcacagttggtgccagcacaatggatagagagttccctagttatgttgttcttggtaacaa |
418 |
Q |
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| T |
42769426 |
atcacagttgctgcaagtacaacggatagagaattcactagttatgttactcttggtaacaa |
42769365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 39188767 - 39188879
Alignment:
| Q |
87 |
aaagcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatg |
186 |
Q |
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|||||||||||||| | |||||||| || ||||| |||||| ||||| ||| ||||||||||| || || | ||||| |||||| ||||| |||| |
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| T |
39188767 |
aaagcaagagttgctgcttacaaagtctgctggccaccaattgatggcagcgaatgctttgatgctgatatcatggcagcctttgatatggctattcatg |
39188866 |
T |
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| Q |
187 |
atggtgttgatgt |
199 |
Q |
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|||| |||||||| |
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| T |
39188867 |
atggggttgatgt |
39188879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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