View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_68 (Length: 445)

Name: NF1199_low_68
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_68
NF1199_low_68
[»] chr5 (21 HSPs)
chr5 (221-437)||(1163930-1164146)
chr5 (1-193)||(1163710-1163902)
chr5 (221-437)||(1849620-1849836)
chr5 (233-437)||(3299149-3299353)
chr5 (233-437)||(3392042-3392246)
chr5 (232-432)||(38987356-38987556)
chr5 (238-432)||(40417946-40418140)
chr5 (9-123)||(1849904-1850021)
chr5 (1-123)||(3299472-3299597)
chr5 (1-123)||(3392365-3392490)
chr5 (232-386)||(39726115-39726269)
chr5 (232-386)||(39879517-39879671)
chr5 (1-122)||(40418223-40418344)
chr5 (1-123)||(39879753-39879875)
chr5 (240-386)||(39168603-39168749)
chr5 (1-123)||(38987644-38987766)
chr5 (1-123)||(39726357-39726479)
chr5 (2-120)||(39399801-39399919)
chr5 (2-123)||(39168785-39168906)
chr5 (255-386)||(39399601-39399735)
chr5 (232-398)||(40596325-40596485)
[»] chr4 (3 HSPs)
chr4 (248-437)||(25912538-25912727)
chr4 (8-116)||(25912322-25912430)
chr4 (9-49)||(44444797-44444837)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 221 - 437
Target Start/End: Original strand, 1163930 - 1164146
Alignment:
Q  221 atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163930 atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa 1164029  T
Q  321 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1164030 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 1164129  T
Q  421 tactaggcagaataatc 437  Q
    |||||||||||||||||    
T  1164130 tactaggcagaataatc 1164146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 1163710 - 1163902
Alignment:
Q  1 ggtcactgggttttaaaatacgaccaagatgagtcctgatttgaaaagtgtgattattatttccaatatctttgacacgagcaactatggcattagctaa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163710 ggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagtgtgattattatttccaatatctttgacacgagcaactatggcattagctaa 1163809  T
Q  101 acgatattttttggcagcagcagtataagtagcaaaagcatcaccatcttcatcatgttcatccttaaaaaccagcttcttcttctgtttatt 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163810 acgatattttttggcagcagcagtataagtagcaaaagcatcaccatcttcatcatgttcatccttaaaaaccagcttcttcttctgtttatt 1163902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 221 - 437
Target Start/End: Complemental strand, 1849836 - 1849620
Alignment:
Q  221 atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa 320  Q
    |||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  || ||||||||||||||    
T  1849836 atctaatttctcgataccgagaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaa 1849737  T
Q  321 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 420  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849736 cagcgggtcaaggtaaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 1849637  T
Q  421 tactaggcagaataatc 437  Q
    |||||||||||||||||    
T  1849636 tactaggcagaataatc 1849620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 233 - 437
Target Start/End: Complemental strand, 3299353 - 3299149
Alignment:
Q  233 aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 332  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299353 aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 3299254  T
Q  333 gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 432  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  3299253 gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa 3299154  T
Q  433 taatc 437  Q
    |||||    
T  3299153 taatc 3299149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 233 - 437
Target Start/End: Complemental strand, 3392246 - 3392042
Alignment:
Q  233 aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 332  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392246 aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 3392147  T
Q  333 gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 432  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  3392146 gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa 3392047  T
Q  433 taatc 437  Q
    |||||    
T  3392046 taatc 3392042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 232 - 432
Target Start/End: Complemental strand, 38987556 - 38987356
Alignment:
Q  232 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 331  Q
    ||||| |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||    
T  38987556 caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa 38987457  T
Q  332 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcaga 431  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||| ||| ||||  |||||||    
T  38987456 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacattaggaggcaga 38987357  T
Q  432 a 432  Q
    |    
T  38987356 a 38987356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 238 - 432
Target Start/End: Complemental strand, 40418140 - 40417946
Alignment:
Q  238 cgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaa 337  Q
    |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||||||||    
T  40418140 cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa 40418041  T
Q  338 tggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 432  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||| ||||||||| ||| ||||  ||||||||    
T  40418040 tggatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatattttcaccgaaagaagcaacaacattaggaggcagaa 40417946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 1850021 - 1849904
Alignment:
Q  9 ggttttaaaatacgaccaagatgagtcctgatttgaaaagt---gtgattattatttccaatatctttgacacgagcaactatggcattagctaaacgat 105  Q
    |||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1850021 ggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaactatggcattagctaaacgat 1849922  T
Q  106 attttttggcagcagcag 123  Q
    ||||||||||||||||||    
T  1849921 attttttggcagcagcag 1849904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 3299597 - 3299472
Alignment:
Q  1 ggtcactgggttttaaaatacgaccaagatgagtcctgatttgaaaagt---gtgattattatttccaatatctttgacacgagcaactatggcattagc 97  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||| ||||||||||| ||||||| |||    
T  3299597 ggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagc 3299498  T
Q  98 taaacgatattttttggcagcagcag 123  Q
    ||||||||||||||||||||||||||    
T  3299497 taaacgatattttttggcagcagcag 3299472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 3392490 - 3392365
Alignment:
Q  1 ggtcactgggttttaaaatacgaccaagatgagtcctgatttgaaaagt---gtgattattatttccaatatctttgacacgagcaactatggcattagc 97  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||| ||||||||||| ||||||| |||    
T  3392490 ggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagc 3392391  T
Q  98 taaacgatattttttggcagcagcag 123  Q
    ||||||||||||||||||||||||||    
T  3392390 taaacgatattttttggcagcagcag 3392365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 232 - 386
Target Start/End: Complemental strand, 39726269 - 39726115
Alignment:
Q  232 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 331  Q
    ||||| |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||    
T  39726269 caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa 39726170  T
Q  332 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 386  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  39726169 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39726115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 232 - 386
Target Start/End: Complemental strand, 39879671 - 39879517
Alignment:
Q  232 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 331  Q
    ||||| |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||    
T  39879671 caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa 39879572  T
Q  332 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 386  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  39879571 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 40418344 - 40418223
Alignment:
Q  1 ggtcactgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagcaactatggcattagcta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| ||||||||||| |  |||| |||||    
T  40418344 ggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaatatctttcacacgagcaaccacagcatcagcta 40418246  T
Q  100 aacgatattttttggcagcagca 122  Q
    ||| |||||||||||||||||||    
T  40418245 aacaatattttttggcagcagca 40418223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 39879875 - 39879753
Alignment:
Q  1 ggtcactgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagcaactatggcattagcta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| ||||||| ||||||||||| |  |||| |||||    
T  39879875 ggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccagtatctttcacacgagcaaccacagcatcagcta 39879777  T
Q  100 aacgatattttttggcagcagcag 123  Q
    |||||||||||||||| |||||||    
T  39879776 aacgatattttttggcggcagcag 39879753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 240 - 386
Target Start/End: Complemental strand, 39168749 - 39168603
Alignment:
Q  240 agaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatg 339  Q
    |||||| |||||| ||||||||||| ||||| ||||||| ||||||||||||||| |||||| | | ||||||||||| || |    |||||||||||||    
T  39168749 agaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaaggaaaaagcagtcaaggtaaatg 39168650  T
Q  340 gatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 386  Q
    ||||||| ||||||| | |||||||||||||||| || |||||||||    
T  39168649 gatcaagtaaagtaatttttttggcaaccctagtgcatataacaata 39168603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 38987766 - 38987644
Alignment:
Q  1 ggtcactgggttttaaaatacgaccaagatgagtcctgatttgaaaagt-gtgattattatttccaatatctttgacacgagcaactatggcattagcta 99  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||||| ||| | |||||||||| ||||||| ||||||||||| |  |||| |||||    
T  38987766 ggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtatctttcacacgagcaaccacagcatcagcta 38987668  T
Q  100 aacgatattttttggcagcagcag 123  Q
    |||||||||||||||| |||||||    
T  38987667 aacgatattttttggcggcagcag 38987644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 39726479 - 39726357
Alignment:
Q  1 ggtcactgggttttaaaatacgaccaagatgagtcctgatttgaaaagt-gtgattattatttccaatatctttgacacgagcaactatggcattagcta 99  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||||| ||| | |||||||||| ||||||| ||||||||||| |  |||| |||||    
T  39726479 ggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtatctttcacacgagcaaccacagcatcagcta 39726381  T
Q  100 aacgatattttttggcagcagcag 123  Q
    |||||||||||||||| |||||||    
T  39726380 aacgatattttttggcggcagcag 39726357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 39399919 - 39399801
Alignment:
Q  2 gtcactgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagcaactatggcattagctaa 100  Q
    ||||| || |||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||| || ||  ||||||||||| | ||||| ||||||    
T  39399919 gtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaaaattttccacacgagcaaccacggcatcagctaa 39399821  T
Q  101 acgatattttttggcagcag 120  Q
    ||| |||||||| |||||||    
T  39399820 acggtattttttagcagcag 39399801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 39168906 - 39168785
Alignment:
Q  2 gtcactgggttttaaaatacgaccaagatgagtcctgatttgaaaagt-gtgattattatttccaatatctttgacacgagcaactatggcattagctaa 100  Q
    ||||| || |||||||||| |||| ||||||||  ||||||||||||| ||| | ||||||||||| |||||  ||||||||||| | ||||| ||||||    
T  39168906 gtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg-tcattatttccaaaatcttccacacgagcaaccacggcatcagctaa 39168808  T
Q  101 acgatattttttggcagcagcag 123  Q
     ||||||||||||||||||||||    
T  39168807 ccgatattttttggcagcagcag 39168785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 255 - 386
Target Start/End: Complemental strand, 39399735 - 39399601
Alignment:
Q  255 actaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaa---ag 351  Q
    |||||||||| ||||  ||||||| ||||||| ||||||| |||||| ||| ||||||||||| || |   ||||||||||||||||||||||||   ||    
T  39399735 actaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaatggatcaagcaaagtag 39399636  T
Q  352 taaatgttttggcaaccctagtacaaataacaata 386  Q
    ||| | |||||||||||||||| || || ||||||    
T  39399635 taatttttttggcaaccctagtgcatatgacaata 39399601  T

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Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 398
Target Start/End: Complemental strand, 40596485 - 40596325
Alignment:
Q  232 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 331  Q
    ||||| |||| |||| ||||||||||||||||  ||||| || ||||||||||||  |||||| |||||| ||| || | ||||||| |||||   ||||    
T  40596485 caatatcgagcacagaatattccactaactgactcctagtgagtgaaggcgtgaaaagtgcattccagtactgatcaacatttaagatacagtacctcaa 40596386  T
Q  332 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatattt 398  Q
    ||| ||   |||||||||||||| | |||| ||||||    ||||||| | |||||||| |||||||    
T  40596385 ggtgaa--aatcaagcaaagtaattcttttagcaacc----tacaaatgataataggactaatattt 40596325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 248 - 437
Target Start/End: Original strand, 25912538 - 25912727
Alignment:
Q  248 atattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagc 347  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||||| |||||||| || ||||||||||||||||||||     
T  25912538 atattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaatggatcaagt 25912637  T
Q  348 aaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc 437  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||  ||||||||||||| ||||  |||||||| ||||    
T  25912638 aaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatatttacactgaaagaagcagcaacattaggaggcagaaaaatc 25912727  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 25912322 - 25912430
Alignment:
Q  8 gggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagcaactatggcattagctaaacgata 106  Q
    |||||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| ||||||||||| |   ||| ||||||||||||    
T  25912322 gggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaatatctttcacacgagcaaccacatcatcagctaaacgata 25912420  T
Q  107 ttttttggca 116  Q
    ||||||||||    
T  25912421 ttttttggca 25912430  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 44444797 - 44444837
Alignment:
Q  9 ggttttaaaatacgaccaagatgagtcctgatttgaaaagt 49  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  44444797 ggttttaaaatacgaccaagatgagtcttgatttgaaaagt 44444837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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