View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_7 (Length: 700)

Name: NF1199_low_7
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_7
NF1199_low_7
[»] chr2 (6 HSPs)
chr2 (81-690)||(42205307-42205924)
chr2 (92-527)||(42212506-42212943)
chr2 (593-661)||(18570971-18571040)
chr2 (624-674)||(12464872-12464922)
chr2 (604-661)||(14268735-14268793)
chr2 (629-659)||(18029593-18029623)
[»] chr8 (4 HSPs)
chr8 (627-690)||(14227192-14227255)
chr8 (627-678)||(37225769-37225820)
chr8 (624-674)||(10170409-10170459)
chr8 (627-659)||(40063952-40063984)
[»] chr5 (3 HSPs)
chr5 (602-690)||(28296298-28296387)
chr5 (624-687)||(9878055-9878118)
chr5 (597-659)||(9055569-9055631)
[»] chr7 (1 HSPs)
chr7 (601-659)||(2525843-2525902)
[»] chr1 (4 HSPs)
chr1 (627-686)||(10475003-10475062)
chr1 (593-659)||(19637769-19637836)
chr1 (636-690)||(17831566-17831620)
chr1 (637-689)||(3490426-3490478)
[»] chr4 (2 HSPs)
chr4 (624-674)||(2796532-2796582)
chr4 (627-659)||(19195188-19195220)
[»] chr3 (4 HSPs)
chr3 (604-669)||(18268007-18268073)
chr3 (627-689)||(52067067-52067129)
chr3 (593-649)||(23271985-23272042)
chr3 (627-659)||(33548843-33548875)
[»] chr6 (1 HSPs)
chr6 (589-688)||(7377951-7378051)


Alignment Details
Target: chr2 (Bit Score: 555; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 81 - 690
Target Start/End: Original strand, 42205307 - 42205924
Alignment:
Q  81 tttggaaatgatcttatagatttatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtgagctc 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205307 tttggaaatgatcttatagatttatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtgagctc 42205406  T
Q  181 atcttacgcaaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaagaggaattttatttggtaccaagttttaagta 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205407 atcttacgcaaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaagaggaattttatttggtaccaagttttaagta 42205506  T
Q  281 caaaaagtatcacatataagataggatatgatatgtgatcaatcagaaatatgtgtaaataaatagataataaaaccttaattaggtgaatttgtaacac 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42205507 caaaaagtatcacatataagataggatatgatatgtgatcaatcagaaatatgtgtgaataaatagataataaaaccttaattaggtgaatttgtaacac 42205606  T
Q  381 gatgatatccatttcacactgaattcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcacttttgattgattattttttctagttgt 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205607 gatgatatccatttcacactgaattcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcacttttgattgattattttttctagttgt 42205706  T
Q  481 gatatgatatcttaatccaacctatcctatacttcacagttagttccctgnnnnnnnaattattattctatatgaagcacctttactccttggattaggc 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  42205707 gatatgatatcttaatccaacctatcctatacttcacagttagttccctgcttttttaattattattctatatgaagcacctttactccttggattaggc 42205806  T
Q  581 gtgttcggtg-------catatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatg 672  Q
    ||||||||||       ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205807 gtgttcggtgtcagatacatatcgtgtccggcaccgacacatatgattattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatg 42205906  T
Q  673 tcgtgtccggtgtctgtg 690  Q
    ||||||||||||||||||    
T  42205907 tcgtgtccggtgtctgtg 42205924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 92 - 527
Target Start/End: Original strand, 42212506 - 42212943
Alignment:
Q  92 tcttatagatttatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtgagctcatct---tacg 188  Q
    ||||||||||||||||| | ||  |||||| || ||||| |||| || ||||||||||||||||||||||||||||||||||| || ||||||   || |    
T  42212506 tcttatagatttatgaaaaggactttggaactt-gttaagttgcgaaatcaattcgatgacatgaatatgttattagctcggtaagttcatctaattatg 42212604  T
Q  189 caaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaagaggaattttattt---ggtaccaagttttaagtacaaaa 285  Q
    || |||||||||| |||||||||||||||||||||| ||||||||||  ||  ||| || || ||||| |||||   |||||| ||||||||||||||||    
T  42212605 cagatctactgagtattgatcatcaatttgtgaatt-ttttgttttgg-tagaatcatacgacgaattctatttattggtacctagttttaagtacaaaa 42212702  T
Q  286 agtatcacatataagataggatatgatatgtgatcaatcagaaatatgtgtaaataaatagataataaaaccttaattaggtgaatttgtaacacgatga 385  Q
    || ||||||||||||||||||||||| ||   ||||||   |||||||||| |||||||||||| ||||| |     ||||||||||||||||| ||||     
T  42212703 agcatcacatataagataggatatgacata--atcaat---aaatatgtgtgaataaatagatagtaaaaacca---taggtgaatttgtaacatgatgt 42212794  T
Q  386 ta-------tccatttcacactg-aattcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcactttt-gattgattattttttctag 476  Q
    ||       |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||       
T  42212795 taattgttatccatttcacactgcaattcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcacttttagattgattaatttttcccc 42212894  T
Q  477 ttgtgatatgatatcttaatccaacctatcctatacttcacagttagttcc 527  Q
    |   | | || |||||||||||||| |||||||||||| |||||| |||||    
T  42212895 t--agctgtgctatcttaatccaacttatcctatactttacagtttgttcc 42212943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 661
Target Start/End: Complemental strand, 18571040 - 18570971
Alignment:
Q  593 tatcgtgtccgacaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgttg 661  Q
    |||||||| |||||| |||||||||||| |  || ||||| ||||||||||||||||||||| |||||||    
T  18571040 tatcgtgttcgacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgttg 18570971  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 674
Target Start/End: Original strand, 12464872 - 12464922
Alignment:
Q  624 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtc 674  Q
    |||||| | ||||||||||||||||||||||||||| ||| ||||| ||||    
T  12464872 ttcaatcatgtcattttctcaaattattattggtgtcggcgtgtcagtgtc 12464922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 604 - 661
Target Start/End: Original strand, 14268735 - 14268793
Alignment:
Q  604 acaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgttg 661  Q
    |||||||||||||| || |  |||||||||||||||||||||||||||||  |||||||    
T  14268735 acaccgacacatatcattacgttcaattaagtcattttctcaaattattaccggtgttg 14268793  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 659
Target Start/End: Original strand, 18029593 - 18029623
Alignment:
Q  629 ttaagtcattttctcaaattattattggtgt 659  Q
    |||||||||||||||||||||||||||||||    
T  18029593 ttaagtcattttctcaaattattattggtgt 18029623  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 627 - 690
Target Start/End: Complemental strand, 14227255 - 14227192
Alignment:
Q  627 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtg 690  Q
    ||||| || |||||||||||||||||||||||||| | ||||| || ||||||| |||||||||    
T  14227255 aattatgttattttctcaaattattattggtgttgacgtgtcagtgacgtgtccagtgtctgtg 14227192  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 678
Target Start/End: Original strand, 37225769 - 37225820
Alignment:
Q  627 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgt 678  Q
    ||||| || |||||||||||||||||||||||| | |||||| |||||||||    
T  37225769 aattatgttattttctcaaattattattggtgtagacatgtctatgtcgtgt 37225820  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 674
Target Start/End: Original strand, 10170409 - 10170459
Alignment:
Q  624 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtc 674  Q
    ||||||||| | |||||||||||||||||||||||||| | || |||||||    
T  10170409 ttcaattaatttattttctcaaattattattggtgttgacgtgccaatgtc 10170459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 659
Target Start/End: Complemental strand, 40063984 - 40063952
Alignment:
Q  627 aattaagtcattttctcaaattattattggtgt 659  Q
    ||||| |||||||||||||||||||||||||||    
T  40063984 aattatgtcattttctcaaattattattggtgt 40063952  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 602 - 690
Target Start/End: Complemental strand, 28296387 - 28296298
Alignment:
Q  602 cgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtg 690  Q
    ||||||| |||||||||| ||  || ||||| ||||||||||||||||||||| ||||| | | |||| ||||||||||  |||||||||    
T  28296387 cgacaccaacacatatgagtacattgaattatgtcattttctcaaattattatcggtgtcgacttgtccatgtcgtgtcttgtgtctgtg 28296298  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 687
Target Start/End: Original strand, 9878055 - 9878118
Alignment:
Q  624 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtct 687  Q
    ||||||||| |||| ||||||||||||||||||||| | | ||||| |||| ||| ||||||||    
T  9878055 ttcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcttgttcggtgtct 9878118  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 659
Target Start/End: Complemental strand, 9055631 - 9055569
Alignment:
Q  597 gtgtccgacaccgacacatatgatattttcaattaagtcattttctcaaattattattggtgt 659  Q
    |||| ||||||||||||||||||||  ||| |||| | |||||| |||||||| |||||||||    
T  9055631 gtgttcgacaccgacacatatgatacattctattatgccattttttcaaattactattggtgt 9055569  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 659
Target Start/End: Original strand, 2525843 - 2525902
Alignment:
Q  601 ccgacaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgt 659  Q
    |||||||||||||||||||| || || ||||| ||||||| ||||||||||||| |||||    
T  2525843 ccgacaccgacacatatgattatattgaattatgtcatttgctcaaattattatcggtgt 2525902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 686
Target Start/End: Original strand, 10475003 - 10475062
Alignment:
Q  627 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtc 686  Q
    ||||| || |||||||||| ||||||  ||||| ||| ||||||||||||||||||||||    
T  10475003 aattatgtgattttctcaagttattagcggtgtcggcgtgtcaatgtcgtgtccggtgtc 10475062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 659
Target Start/End: Complemental strand, 19637836 - 19637769
Alignment:
Q  593 tatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgt 659  Q
    ||||||||||||||||||||||||||| ||  || ||| | |||||||||| |||||||||| |||||    
T  19637836 tatcgtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgt 19637769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 636 - 690
Target Start/End: Original strand, 17831566 - 17831620
Alignment:
Q  636 attttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtg 690  Q
    |||||||||||||||||  ||||| ||| ||||| |||||| |||||||||||||    
T  17831566 attttctcaaattattagcggtgtcggcgtgtcagtgtcgtatccggtgtctgtg 17831620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 637 - 689
Target Start/End: Original strand, 3490426 - 3490478
Alignment:
Q  637 ttttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgt 689  Q
    ||||||||||||||||   |||| ||| ||||| |||||||||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagtgtcgtgtccggtgtctgt 3490478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 674
Target Start/End: Complemental strand, 2796582 - 2796532
Alignment:
Q  624 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtc 674  Q
    ||||||||| ||||||||||||||||||| ||||||||   ||||||||||    
T  2796582 ttcaattaattcattttctcaaattattaatggtgttgaagtgtcaatgtc 2796532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 659
Target Start/End: Original strand, 19195188 - 19195220
Alignment:
Q  627 aattaagtcattttctcaaattattattggtgt 659  Q
    ||||| |||||||||||||||||||||||||||    
T  19195188 aattacgtcattttctcaaattattattggtgt 19195220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 604 - 669
Target Start/End: Original strand, 18268007 - 18268073
Alignment:
Q  604 acaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgttggcatgtca 669  Q
    |||||||||||| |||| |  ||||||||| ||||||||||||||||||||  |||||| |||||||    
T  18268007 acaccgacacatgtgattacgttcaattaattcattttctcaaattattatcagtgttgacatgtca 18268073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 627 - 689
Target Start/End: Complemental strand, 52067129 - 52067067
Alignment:
Q  627 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgt 689  Q
    |||||| ||||||||| |||||||||||||| | | | ||||| ||| |||||||||||||||    
T  52067129 aattaattcattttcttaaattattattggtatcgacgtgtcagtgttgtgtccggtgtctgt 52067067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 649
Target Start/End: Original strand, 23271985 - 23272042
Alignment:
Q  593 tatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaatta 649  Q
    |||||||||| |||||||||||||||| ||  |||||||| |||| ||||||||||||    
T  23271985 tatcgtgtccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 659
Target Start/End: Complemental strand, 33548875 - 33548843
Alignment:
Q  627 aattaagtcattttctcaaattattattggtgt 659  Q
    ||||||||||||||||||||||||||| |||||    
T  33548875 aattaagtcattttctcaaattattatcggtgt 33548843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 589 - 688
Target Start/End: Complemental strand, 7378051 - 7377951
Alignment:
Q  589 tgcatatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtct 687  Q
    ||||| ||||||||||||||||||||||| | ||  || ||||| || ||||||||||||| |||  ||||| ||  ||||  ||| |||||||||||||    
T  7378051 tgcatgtcgtgtccgacaccgacacatataattacattgaattatgtgattttctcaaatttttagcggtgtcggggtgtctgtgttgtgtccggtgtct 7377952  T
Q  688 g 688  Q
    |    
T  7377951 g 7377951  T

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