View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_71 (Length: 433)
Name: NF1199_low_71
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 52535160 - 52535397
Alignment:
| Q |
1 |
ggtgctgcaatggttagacaacattttggtgaacctggtgcgcctatctaaccacctaattcaattcagtcatttttcaaaacatgttcgttcgccgtta |
100 |
Q |
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| T |
52535160 |
ggtgctgcaatggttagataacgttttggtgaacctggtgcgcctatctaaccacctaattcaattcagtcatttttcaaaacatgttcgttcgtcgtta |
52535259 |
T |
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| Q |
101 |
catattatttggccatctcatgtttgggttacttcgaaggaaataaatttccgtatctttcgacacaaagaagaatctcagcaatatcttatcgacaaag |
200 |
Q |
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| T |
52535260 |
catattatttggccatcgcatgtttgggttacttcgaaggaaataaattctcgtatctttcgacacaaagaagaatctcagcaatatcttatcgacaaag |
52535359 |
T |
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| Q |
201 |
ttaagttgttgtcttattggtagttgaaggcaaataatgctaa |
243 |
Q |
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| T |
52535360 |
ct-----gttgtcttattggtagttgaaggcaaataatgctaa |
52535397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 52535468 - 52535510
Alignment:
| Q |
316 |
atgacttaaccaaaagaatatttggacctccacatattcttcg |
358 |
Q |
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| T |
52535468 |
atgacttaaccaaaagaatatttggacctccacattttcttcg |
52535510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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