View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_low_72 (Length: 432)
Name: NF1199_low_72
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_72 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 30 - 423
Target Start/End: Complemental strand, 36993172 - 36992779
Alignment:
| Q |
30 |
ggagacaaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttttgatctgtccctttcttcatcttcttcgtc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36993172 |
ggagacaaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttttgatctgtccctttcttcatcttcttcgtc |
36993073 |
T |
|
| Q |
130 |
acatgtgcactctgcagctattagagttgggactataaagagaatgaagatcgaaagaacaaagagtttgaatcccatttcaatggttagaaattcagat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36993072 |
acatgtgcactctgcagctattagagttgggactataaagagaatgaagatcgaaagaacaaagagtttgaatcccatttcaatggttagaaattcagat |
36992973 |
T |
|
| Q |
230 |
ttaagaggatatgcacttaatgacaataacaaagatgggtttatatggatattttgttagttgaatttgtagcttttcaaaattgtgattgaatatttaa |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36992972 |
ttaagaggatatgcacttaatgacaataacaaagatgagtttatatggatattttgttagttgaatttgtaggttttcaaaattgtgattgaatatttaa |
36992873 |
T |
|
| Q |
330 |
tctgatatttccatgttacattataatatgcacatactgacagcaacaaagatggaatttgtttccgttcatatggcttgttatttatattatt |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36992872 |
tctgatatttccatgttacattataatatgcacatactgacagcaacaaagatggaatttgtttccgttcatatggcttgttatttattttatt |
36992779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 30 - 423
Target Start/End: Complemental strand, 37018612 - 37018219
Alignment:
| Q |
30 |
ggagacaaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttttgatctgtccctttcttcatcttcttcgtc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37018612 |
ggagacaaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttttgatctgtccctttcttcatcttcttcgtc |
37018513 |
T |
|
| Q |
130 |
acatgtgcactctgcagctattagagttgggactataaagagaatgaagatcgaaagaacaaagagtttgaatcccatttcaatggttagaaattcagat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37018512 |
acatgtgcactctgcagctattagagttgggactataaagagaatgaagatcgaaagaacaaagagtttgaatcccatttcaatggttagaaattcagat |
37018413 |
T |
|
| Q |
230 |
ttaagaggatatgcacttaatgacaataacaaagatgggtttatatggatattttgttagttgaatttgtagcttttcaaaattgtgattgaatatttaa |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37018412 |
ttaagaggatatgcacttaatgacaataacaaagatgagtttatatggatattttgttagttgaatttgtaggttttcaaaattgtgattgaatatttaa |
37018313 |
T |
|
| Q |
330 |
tctgatatttccatgttacattataatatgcacatactgacagcaacaaagatggaatttgtttccgttcatatggcttgttatttatattatt |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37018312 |
tctgatatttccatgttacattataatatgcacatactgacagcaacaaagatggaatttgtttccgttcatatggcttgttatttattttatt |
37018219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 36 - 161
Target Start/End: Complemental strand, 36955485 - 36955360
Alignment:
| Q |
36 |
aaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttttgatctgtccctttcttcatcttcttcgtcacatgt |
135 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |||| ||||| | | |||| || ||||||||||| || |||||||| |
|
|
| T |
36955485 |
aaacaccaattgcacttacaactaaaattgacactaaagctgctattttgtaacgtaaggctttggctttgtctctatcttcatcttcctcatcacatgt |
36955386 |
T |
|
| Q |
136 |
gcactctgcagctattagagttggga |
161 |
Q |
| |
|
||| ||||| |||||||||||||||| |
|
|
| T |
36955385 |
gcattctgcggctattagagttggga |
36955360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 34 - 156
Target Start/End: Complemental strand, 36951000 - 36950878
Alignment:
| Q |
34 |
acaaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttttgatctgtccctttcttcatcttcttcgtcacat |
133 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| |||||||| ||||| || || || || ||||| ||| |||| || ||||||||||||| || ||| |
|
|
| T |
36951000 |
acaaacaccaattccacttgcaactagtattgatactaaagctgctatcttataacgaagggctttggatttgtctctatcttcatcttctttatcgcat |
36950901 |
T |
|
| Q |
134 |
gtgcactctgcagctattagagt |
156 |
Q |
| |
|
||||| ||||| ||||||||||| |
|
|
| T |
36950900 |
gtgcattctgcggctattagagt |
36950878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 36938775 - 36938642
Alignment:
| Q |
34 |
acaaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttttgatctgtccctttcttcatcttcttcgtcacat |
133 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||| ||||| || || || |||||||| | | |||| || ||| ||||||||| ||||| |
|
|
| T |
36938775 |
acaaacaccaattccacttgcaactaatattgatactaaagctgctatcttataacgaagagctttgggtttgtctctatctaaatcttcttcatcacac |
36938676 |
T |
|
| Q |
134 |
gtgcactctgcagctattagagttgggactataa |
167 |
Q |
| |
|
||||| || || ||||||||||| |||| ||||| |
|
|
| T |
36938675 |
gtgcattcggcggctattagagtcgggattataa |
36938642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University