View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_76 (Length: 428)
Name: NF1199_low_76
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 105 - 402
Target Start/End: Original strand, 13449331 - 13449628
Alignment:
| Q |
105 |
ttccctctcatcttcaccaaacgatcgaatagattcttcgtttatgctccgatcatcgagtcttcacaagtttatcggttgaataatcgagtgttctttc |
204 |
Q |
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| T |
13449331 |
ttccctctcatcttcaccaaacgatcgaatagattcttcgtttatgctccgatcatcgagtcttcacaagtttatcggttgaataatcgagtgtgctttc |
13449430 |
T |
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| Q |
205 |
aatttctaattcaagattttccaacatcgatcctatatcatttgctgatccgaaatcgagatttccattctaaatataaggaatccctctacatctcacg |
304 |
Q |
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| T |
13449431 |
aatttctagtccaagattttccaacatcgatcctgcatcatttgctgatccgaagtcgagatttccattctgaatataaggaatccctctacatctcaca |
13449530 |
T |
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| Q |
305 |
aatctttggtatgtagttgctttgtatctatttttcttgaattgatattgtgctttagatttgttaaaatactcctacaatttatgaagtattttatt |
402 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13449531 |
aatctttagtatgtagttcctttgtatctatttttcttgaattgatattgtgctttagatttgttaaaatactcctacaatttatgaagtattttatt |
13449628 |
T |
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