View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_77 (Length: 427)

Name: NF1199_low_77
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_77
NF1199_low_77
[»] chr7 (4 HSPs)
chr7 (80-335)||(22788079-22788334)
chr7 (278-336)||(9939416-9939474)
chr7 (278-336)||(10027635-10027693)
chr7 (278-336)||(36698734-36698792)
[»] chr1 (2 HSPs)
chr1 (260-336)||(496961-497037)
chr1 (280-320)||(52090046-52090086)
[»] chr4 (4 HSPs)
chr4 (265-336)||(29800518-29800589)
chr4 (278-336)||(25887275-25887333)
chr4 (278-336)||(29690924-29690982)
chr4 (278-336)||(48694727-48694785)
[»] chr3 (2 HSPs)
chr3 (278-336)||(35656471-35656529)
chr3 (279-336)||(40740229-40740286)
[»] chr2 (2 HSPs)
chr2 (278-326)||(17388037-17388085)
chr2 (278-336)||(26646370-26646429)
[»] scaffold0369 (1 HSPs)
scaffold0369 (278-336)||(14390-14448)
[»] chr8 (2 HSPs)
chr8 (278-336)||(45193849-45193907)
chr8 (260-336)||(4491445-4491522)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 80 - 335
Target Start/End: Complemental strand, 22788334 - 22788079
Alignment:
Q  80 atactcataggtaatacttcttccacattgattatttttctatttgtaataaatgtccacaagcaaaaattagaatacatttagtataacaaagttatat 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22788334 atactcataggtaatacttcttccacattgattatttttctatttgtaataaatgtccacaagcaaaaattagaatacatttagtataacaaagttatat 22788235  T
Q  180 attttcagagccaatggcaaagagtattatgtgtttgtttattagttagtttcaagagtcaagatcatgtttgactagtttcagagccgtctttaggaag 279  Q
     |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |  ||||    
T  22788234 tttttcagagccaatggcaaagagtcttatgtgtttgtttattagttagttttaagagtcaagatcatgtttgactagtttcagagccgtctctgtgaag 22788135  T
Q  280 gtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatattttt 335  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22788134 gtgcaaacagttgtatagagttggacctccaaaattttgggacccaaaatattttt 22788079  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 9939474 - 9939416
Alignment:
Q  278 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttt 336  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| |||||||||||||||    
T  9939474 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatatttttt 9939416  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 10027635 - 10027693
Alignment:
Q  278 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttt 336  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| |||||||||||||||    
T  10027635 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatatttttt 10027693  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 36698792 - 36698734
Alignment:
Q  278 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttt 336  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| |||||||||||||||    
T  36698792 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatatttttt 36698734  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 497037 - 496961
Alignment:
Q  260 tcagagccgtctttaggaaggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttt 336  Q
    |||| ||||||  |||| |||||||||||  ||||||||||||| |||||  ||||||||| |||||||||||||||    
T  497037 tcagggccgtccctagggaggtgcaaacaactctatagagttgggcctccccaattttggggcccaaaatatttttt 496961  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 52090046 - 52090086
Alignment:
Q  280 gtgcaaacagttctatagagttggacctccaaaattttggg 320  Q
    |||||||||| ||||| ||||||| ||||||||||||||||    
T  52090046 gtgcaaacagctctatggagttgggcctccaaaattttggg 52090086  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 29800589 - 29800518
Alignment:
Q  265 gccgtctttaggaaggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttt 336  Q
    |||||||||| | | |||||||||||||||||||||||| |||||  |||||| ||  ||||||||||||||    
T  29800589 gccgtctttaaggatgtgcaaacagttctatagagttgggcctccccaattttagggtccaaaatatttttt 29800518  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 25887333 - 25887275
Alignment:
Q  278 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttt 336  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| |||||||||||||||    
T  25887333 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatatttttt 25887275  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 29690982 - 29690924
Alignment:
Q  278 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttt 336  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| |||||||||||||||    
T  29690982 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatatttttt 29690924  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 48694727 - 48694785
Alignment:
Q  278 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttt 336  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| |||||||||||||||    
T  48694727 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatatttttt 48694785  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 35656529 - 35656471
Alignment:
Q  278 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttt 336  Q
    |||||||||||| ||||||||| |||||||||  ||||||||| |||||||||| ||||    
T  35656529 aggtgcaaacagctctatagagctggacctccccaattttggggcccaaaatatatttt 35656471  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 40740229 - 40740286
Alignment:
Q  279 ggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttt 336  Q
    ||||||||||| ||||  ||||||| ||||| |||||||| | |||||||||||||||    
T  40740229 ggtgcaaacagctctactgagttgggcctcctaaattttgaggcccaaaatatttttt 40740286  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 17388085 - 17388037
Alignment:
Q  278 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaa 326  Q
    |||||||||||| |||||||||||||||||||  ||||||||| |||||    
T  17388085 aggtgcaaacagctctatagagttggacctcctcaattttggggcccaa 17388037  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 26646370 - 26646429
Alignment:
Q  278 aggtgcaaacagttctatagagttggacctccaaaattttggga-cccaaaatatttttt 336  Q
    |||||||||||| ||||||||| ||| |||||  |||||||||| |||||||||||||||    
T  26646370 aggtgcaaacagctctatagagctgggcctccccaattttgggagcccaaaatatttttt 26646429  T

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Target: scaffold0369 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 14390 - 14448
Alignment:
Q  278 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttt 336  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| |||||||||||||||    
T  14390 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatatttttt 14448  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 45193907 - 45193849
Alignment:
Q  278 aggtgcaaacagttctatagagttggacctccaaaattttgggacccaaaatatttttt 336  Q
    |||||||||||| |||| |||| ||| |||||  ||||||||| |||||||||||||||    
T  45193907 aggtgcaaacagctctacagagctgggcctccccaattttggggcccaaaatatttttt 45193849  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 4491445 - 4491522
Alignment:
Q  260 tcagagccgtctttaggaaggtgcaaacagttctatagagttggacctccaaaatttt-gggacccaaaatatttttt 336  Q
    |||| ||||||| | || |||||||||||| ||||| |||||||||||||  |||||| |||  ||||||||||||||    
T  4491445 tcagggccgtctatggggaggtgcaaacagctctattgagttggacctccccaattttgggggtccaaaatatttttt 4491522  T

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