View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_80 (Length: 421)
Name: NF1199_low_80
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 325
Target Start/End: Complemental strand, 43372107 - 43371805
Alignment:
| Q |
8 |
tgagatgaatacatacggctgcaacaccaattaaacgaagaaacattcgggaaccaaaataaagagctaaagcctcaaaaatgccaatccccaaagctaa |
107 |
Q |
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| T |
43372107 |
tgagatgaatacatacggctgcaacaccaattaaacgaagaaacattcgggaaccaaaatacaaagctaaagcctcaaaaatgccaatacccaaagctaa |
43372008 |
T |
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| Q |
108 |
tagcaaagcagtggagacagaggagagttgttttctttgataaactgatttgaaagggttgttagcattctgagaagaagaaatgttggccatgtcttgg |
207 |
Q |
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| T |
43372007 |
tagcaaagcagtggagacagaggggagttgttttctttga---------------gggttgttagcattctgagaagaagaaatgttggccatgtcttgg |
43371923 |
T |
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| Q |
208 |
gcaacaaaagaagtagcaacactaagaagtggaatgttaaaaagtttagaaatgatgttaaagatgacaacagaaacaccagaagaagccaattcaagag |
307 |
Q |
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| T |
43371922 |
gcaacaaaagaagtagcaacactaagaagtggaatgttaaaaagtttagaaatgatgttaaagatgacaacagaaacaccagaagaagccaattcaagag |
43371823 |
T |
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| Q |
308 |
taccaagtcgaccaatgt |
325 |
Q |
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| T |
43371822 |
taccaagtcgaccaatgt |
43371805 |
T |
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