View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_84 (Length: 416)
Name: NF1199_low_84
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 36 - 403
Target Start/End: Complemental strand, 4918773 - 4918406
Alignment:
| Q |
36 |
agcataggccgaaaacaagctaccagaacagaaatacacagacacagcacacataatttcaatcctcaagcagccgagaaccagatacattaacattttg |
135 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4918773 |
agcaaaggccgaaaacaagctaccagaacagaaatacacagacacagcgcatataattccaatcctcaagcagccgagaaccagatacattaacattttg |
4918674 |
T |
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| Q |
136 |
acctaaatatctcttatgatatcgctctaagtcactaacgagataccggtcaacttaagaaaatgtaaaccatgtcatctaatgcattttgagatacgac |
235 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
4918673 |
acctaaatatctcttatgatatcgctctaagtcactgacgagctaccggtcaactttagaaaatgtaaaacatatcatctaatgcattttgagatacgac |
4918574 |
T |
|
| Q |
236 |
caagataacaccgtaactaaatacattaacattttgacctacatatctcttataatatcatcgaacagtgggaccacatgttcacattacgacatcgatc |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4918573 |
caagataacaccgtaactaaatacattaacattttgacctacatatctcttataatatcatcgaccagtgggaccacatgttcacattacgacatcgatc |
4918474 |
T |
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| Q |
336 |
tcaatacagccgcctgtacgctttttacaagatcatttttggtcaagttgtatcctgttcccatctgc |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4918473 |
tcaatacagccgcctgtacgctttttacaagatcatttttggtcaagttgtatcctgttcccatctgc |
4918406 |
T |
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