View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_low_85 (Length: 411)
Name: NF1199_low_85
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_85 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold0902 (2 HSPs) |
| | |
|
| [»] scaffold1801 (1 HSPs) |
| | |
|
| [»] scaffold1118 (2 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 20421501 - 20421196
Alignment:
| Q |
16 |
atcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaataca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20421501 |
atcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaacccaaaatgcaaaaataca |
20421402 |
T |
|
| Q |
116 |
gaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaactttatcacaacacatgttcactctagtactatgccaatgttaga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20421401 |
gaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttcaaactttatcacaacacatgttcactctagtactatgccaatgttaga |
20421302 |
T |
|
| Q |
216 |
agacttcatcaattcccctggacctaaacactaagnnnnnnnntctataacaagaaaaattcaaatcagttactctgctgaaattcattttcatagtgaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20421301 |
agacttcatcaattcccctggacctaaacactaagaaaaaaaatctataacaagaaaaattcaaatcagttactctgctgaaattcattttcatagtgaa |
20421202 |
T |
|
| Q |
316 |
agtgat |
321 |
Q |
| |
|
|||||| |
|
|
| T |
20421201 |
agtgat |
20421196 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 9884414 - 9884718
Alignment:
| Q |
16 |
atcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaataca |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9884414 |
atcaaaccatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaacccaaaatgcaaaaataca |
9884513 |
T |
|
| Q |
116 |
gaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaa-ctttatcacaacacatgttcactctagtactatgccaatgttag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
9884514 |
gaatttcattacaaagaaaccaaagaatcaacatacgaacacacatattatgaaagctttatcacagcacatgttcactctagtactaggccaatgttag |
9884613 |
T |
|
| Q |
215 |
aagacttcatcaattcccctggacctaaacactaagnnnnnnnntctataacaagaaaaattcaaatcagttactctgctgaaattcattttcatagtga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9884614 |
aagacttcatcaattcccctggacctaaacactaagaaaaaaaatctataacaagaaaaattcaaatcagttactctgctgaaattcattttcatagtga |
9884713 |
T |
|
| Q |
315 |
aagtg |
319 |
Q |
| |
|
||||| |
|
|
| T |
9884714 |
aagtg |
9884718 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 14316166 - 14316261
Alignment:
| Q |
38 |
ctaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaatacagaatttcattacaaagaaa |
134 |
Q |
| |
|
|||||||| |||||| |||||||| ||||| ||||||| ||||||||||| ||||| || |||||||||||||| |||||| | ||||||||| |
|
|
| T |
14316166 |
ctaatccttaacaaatcaaatgaactctttt-caatttcgtggcaatggtttaaagaaaccctaaatgcaaaaatactaaatttcctcacaaagaaa |
14316261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 14247683 - 14247731
Alignment:
| Q |
86 |
gtttagagaaatccaaaatgcaaaaatacagaatttcattacaaagaaa |
134 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| ||||||||| |
|
|
| T |
14247683 |
gtttagagaaaccctaaatgcaaaaatactaaatttcatcacaaagaaa |
14247731 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 135334 - 135034
Alignment:
| Q |
16 |
atcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaa-tgc-aaaaata |
113 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
135334 |
atcaaaccatatcacagatcaactaatcctaaacaaaacaaattaa-cctttttcaatttgtcggcaatggtttagagaaacccaaaaatgcgaaaaata |
135236 |
T |
|
| Q |
114 |
cagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaa-ctttatcacaacacatgttcactctagtactatgccaatgtt |
212 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||| |||| ||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
135235 |
cagaatttcatcacaaagaaaccaaagaatcagcataagaacacacgtattatgaaagctttttcacagcacatgttcactctagtactaggccaatgtt |
135136 |
T |
|
| Q |
213 |
agaagacttcatcaattcccctggacctaaacact------aagnnnnnnnntctataacaagaaaaattcaaatcagttactctgctgaaattcatttt |
306 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| | || ||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
135135 |
agaagacgtcatcaattcccctggacataaacagtaaaaaaaaaaaaaaaaatctataacaagaaaaatacaaaccagttactctgctgaaattcatttt |
135036 |
T |
|
| Q |
307 |
ca |
308 |
Q |
| |
|
|| |
|
|
| T |
135035 |
ca |
135034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 11955047 - 11954993
Alignment:
| Q |
19 |
aaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaat |
73 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11955047 |
aaaccatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaat |
11954993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 15607291 - 15607059
Alignment:
| Q |
16 |
atcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaataca |
115 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| || |||||||||| ||||||||||||| ||||| |||||||||| ||||||| | |||||||| |
|
|
| T |
15607291 |
atcaaaccatattacagatcaactaatcctaaactaagcaaatgaaacatttttcaatttcttggcaataatttagagaaaaccaaaatacgaaaataca |
15607192 |
T |
|
| Q |
116 |
gaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaactttatcacaacacatgttcactctagtactatgccaatgttaga |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| |||||||||||| |||| ||| ||| | || ||||||| |||||||| | | |||||| ||| |
|
|
| T |
15607191 |
gaatttcatcacaaagaaaccaaagaatcagcatatcaacacacatattatgaa--tttttcaaagcatatgttcaatctagtacaaggacaatgtcaga |
15607094 |
T |
|
| Q |
216 |
agacttcatcaattcccctggacctaaacactaag |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
15607093 |
agacttcatcaattcccctggacctaaacagtaag |
15607059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 112159 - 111987
Alignment:
| Q |
16 |
atcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaataca |
115 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| | |||||||||| |
|
|
| T |
112159 |
atcaaaccatatcacatatcaactaatcctaaacaaaacaaattaaacctttttcaatttatcggcaatggtttagagaaacc-------caaaaataca |
112067 |
T |
|
| Q |
116 |
gaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaa-ctttatcacaacacatgttcactc |
194 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||| |||| ||||| ||||||||||||| |
|
|
| T |
112066 |
gaatttcatcacaaagaaaccaaagaatcagcataagaacacacgtattatgaaagctttttcacagcacatgttcactc |
111987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 308
Target Start/End: Complemental strand, 111962 - 111849
Alignment:
| Q |
195 |
tagtactatgccaatgttagaagacttcatcaattcccctggacctaaacactaagnnnnnnnntctataacaagaaaaattcaaatcagttactctgct |
294 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
111962 |
tagtactaggccaatgttagaagacttcatcaattcccctggacataaacaataaaaaaaataatctataacaagaaaaatacaaattagttactctgct |
111863 |
T |
|
| Q |
295 |
gaaattcattttca |
308 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
111862 |
gaaattcattttca |
111849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 36909898 - 36910104
Alignment:
| Q |
18 |
caaactatatcacagatcaactaatccta--aacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaataca |
115 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||| ||||||| ||| |||||||| |||||||| |
|
|
| T |
36909898 |
caaaccatatcacagatcacctaatcctataaacaaaacaaatgaaacccttttcaatttcttggcaatagtttagaaaaacccaaaatgtaaaaatact |
36909997 |
T |
|
| Q |
116 |
gaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaactttatcacaacacatgttcactctagtactatgccaatgttaga |
215 |
Q |
| |
|
|||||||| ||||||||||| |||| || | || |||||| | ||| || |||||| ||| ||| ||||||| ||||||||||||| |||| | | |
|
|
| T |
36909998 |
aaatttcatagcaaagaaaccatagaagcagcttataaacacagaaattatg-aactttttcaaaacgcatgttcgatctagtactatgcaaatgcaata |
36910096 |
T |
|
| Q |
216 |
agacttca |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
36910097 |
agacttca |
36910104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 2089 - 2146
Alignment:
| Q |
193 |
tctagtactatgccaatgttagaagacttcatcaattcccctggacctaaacactaag |
250 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
2089 |
tctagtactaggccaatgtcagaagtcttcatcaattcccctagacctaaacagtaag |
2146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 1991 - 2053
Alignment:
| Q |
80 |
gcaatggtttagagaaatccaaaatgcaaaaatacagaatttcattacaaagaaaccaaagaa |
142 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | ||| |||| ||||| || |||||||| |
|
|
| T |
1991 |
gcaatggtttagagaaacccaaaatgcaaaaattctaaatatcatgacaaaaaacccaaagaa |
2053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 809 - 748
Alignment:
| Q |
81 |
caatggtttagagaaatccaaaatgcaaaaatacagaatttcattacaaagaaaccaaagaa |
142 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| ||||| || ||| ||||||||||||| |
|
|
| T |
809 |
caatggtttagaaaaacccaaaatgcaaaaatactaaattttatcacagagaaaccaaagaa |
748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 2176 - 2278
Alignment:
| Q |
38 |
ctaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaatac--agaatttcattacaaagaaac |
135 |
Q |
| |
|
|||||||||||| || |||||||| ||||| ||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2176 |
ctaatcctaaacgaatcaaatgaactctttt-caatttcgtgacaatggtttagagaaacacaaaatgcaaaaatactataaatttcatcacaaagaaac |
2274 |
T |
|
| Q |
136 |
caaa |
139 |
Q |
| |
|
|||| |
|
|
| T |
2275 |
caaa |
2278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 2309 - 2345
Alignment:
| Q |
204 |
gccaatgttagaagacttcatcaattcccctggacct |
240 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
2309 |
gccaatgtaagaagacttcatcaattcccctagacct |
2345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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