View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_low_9 (Length: 680)
Name: NF1199_low_9
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_9 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 541; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 81 - 680
Target Start/End: Original strand, 42205307 - 42205914
Alignment:
| Q |
81 |
tttggaaatgatcttatagatttatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtgagctc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205307 |
tttggaaatgatcttatagatttatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtgagctc |
42205406 |
T |
|
| Q |
181 |
atcttacgcaaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaagaggaattttatttggtaccaagttttaagta |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205407 |
atcttacgcaaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaagaggaattttatttggtaccaagttttaagta |
42205506 |
T |
|
| Q |
281 |
caaaaagtatcacatataagataggatatgatatgtgatcaatcagaaatatgtgtaaataaatagataataaaaccttaattaggtgaatttgtaacac |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205507 |
caaaaagtatcacatataagataggatatgatatgtgatcaatcagaaatatgtgtgaataaatagataataaaaccttaattaggtgaatttgtaacac |
42205606 |
T |
|
| Q |
381 |
gatgatatccatttcacactgaattcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcacttttgattgattattttttctagttgt |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205607 |
gatgatatccatttcacactgaattcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcacttttgattgattattttttctagttgt |
42205706 |
T |
|
| Q |
481 |
gatatgatatcttaatccaacctatcctatacttcacagttagttccctgnnnnnnnaattattattctatatgaagcacctttactccttggattaggc |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205707 |
gatatgatatcttaatccaacctatcctatacttcacagttagttccctgcttttttaattattattctatatgaagcacctttactccttggattaggc |
42205806 |
T |
|
| Q |
581 |
gtgttcggtg-------catatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggcgttggcatgtcaatg |
672 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42205807 |
gtgttcggtgtcagatacatatcgtgtccggcaccgacacatatgattattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatg |
42205906 |
T |
|
| Q |
673 |
tcgtgtcc |
680 |
Q |
| |
|
|||||||| |
|
|
| T |
42205907 |
tcgtgtcc |
42205914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 92 - 527
Target Start/End: Original strand, 42212506 - 42212943
Alignment:
| Q |
92 |
tcttatagatttatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtgagctcatct---tacg |
188 |
Q |
| |
|
||||||||||||||||| | || |||||| || ||||| |||| || ||||||||||||||||||||||||||||||||||| || |||||| || | |
|
|
| T |
42212506 |
tcttatagatttatgaaaaggactttggaactt-gttaagttgcgaaatcaattcgatgacatgaatatgttattagctcggtaagttcatctaattatg |
42212604 |
T |
|
| Q |
189 |
caaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaagaggaattttattt---ggtaccaagttttaagtacaaaa |
285 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||| |||||||||| || ||| || || ||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
42212605 |
cagatctactgagtattgatcatcaatttgtgaatt-ttttgttttgg-tagaatcatacgacgaattctatttattggtacctagttttaagtacaaaa |
42212702 |
T |
|
| Q |
286 |
agtatcacatataagataggatatgatatgtgatcaatcagaaatatgtgtaaataaatagataataaaaccttaattaggtgaatttgtaacacgatga |
385 |
Q |
| |
|
|| ||||||||||||||||||||||| || |||||| |||||||||| |||||||||||| ||||| | ||||||||||||||||| |||| |
|
|
| T |
42212703 |
agcatcacatataagataggatatgacata--atcaat---aaatatgtgtgaataaatagatagtaaaaacca---taggtgaatttgtaacatgatgt |
42212794 |
T |
|
| Q |
386 |
ta-------tccatttcacactg-aattcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcactttt-gattgattattttttctag |
476 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
42212795 |
taattgttatccatttcacactgcaattcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcacttttagattgattaatttttcccc |
42212894 |
T |
|
| Q |
477 |
ttgtgatatgatatcttaatccaacctatcctatacttcacagttagttcc |
527 |
Q |
| |
|
| | | || |||||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
42212895 |
t--agctgtgctatcttaatccaacttatcctatactttacagtttgttcc |
42212943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 652
Target Start/End: Original strand, 14268735 - 14268784
Alignment:
| Q |
604 |
acaccgacacatatgat-attttcaattaagtcattttctcaaattatta |
652 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
14268735 |
acaccgacacatatcattacgttcaattaagtcattttctcaaattatta |
14268784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 653
Target Start/End: Complemental strand, 18571040 - 18570979
Alignment:
| Q |
593 |
tatcgtgtccgacaccgacacatatgat-attttcaattaagtcattttctcaaattattat |
653 |
Q |
| |
|
|||||||| |||||| |||||||||||| | || ||||| ||||||||||||||||||||| |
|
|
| T |
18571040 |
tatcgtgttcgacactgacacatatgattacattgaattatgtcattttctcaaattattat |
18570979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 678
Target Start/End: Original strand, 4114226 - 4114280
Alignment:
| Q |
624 |
ttcaattaagtcattttctcaaattattattggcgttggcatgtcaatgtcgtgt |
678 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| ||| | ||||| |||||||| |
|
|
| T |
4114226 |
ttcaattatgtcattttctcaaattattatcggcattgacgtgtcagtgtcgtgt |
4114280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 627 - 668
Target Start/End: Original strand, 9773 - 9814
Alignment:
| Q |
627 |
aattaagtcattttctcaaattattattggcgttggcatgtc |
668 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| |||||||| |
|
|
| T |
9773 |
aattaagtgattttctcaaattattagtggcgtcggcatgtc |
9814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 601 - 653
Target Start/End: Original strand, 2525843 - 2525896
Alignment:
| Q |
601 |
ccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattat |
653 |
Q |
| |
|
||||||||||||||||||| ||| || ||||| ||||||| ||||||||||||| |
|
|
| T |
2525843 |
ccgacaccgacacatatgattatattgaattatgtcatttgctcaaattattat |
2525896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 649
Target Start/End: Original strand, 23271985 - 23272042
Alignment:
| Q |
593 |
tatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaatta |
649 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||||||| |||| |||||||||||| |
|
|
| T |
23271985 |
tatcgtgtccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta |
23272042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 653
Target Start/End: Complemental strand, 19637836 - 19637775
Alignment:
| Q |
593 |
tatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattat |
653 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||| | |||||||||| |||||||||| |
|
|
| T |
19637836 |
tatcgtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattat |
19637775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University