View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_91 (Length: 404)
Name: NF1199_low_91
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_91 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 68 - 390
Target Start/End: Original strand, 30551018 - 30551339
Alignment:
| Q |
68 |
ttactacaacatagttgttgaacactgtcatttattatgtgtaccaggtgcttttgtaggtagtcatggattcaccaagggaaacaacagaaggagaaag |
167 |
Q |
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| T |
30551018 |
ttactacaacatagttgttgaacactgtc-tttgttatgtgtaccaggttcttttgtaggtagtcatggattcaccaagggaaacaatagaaggagaaag |
30551116 |
T |
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| Q |
168 |
agatttgattagcacgttacatgaaagcattcttagtcagatcctgtctttcattccaatcgtagacgcggttagcactagcgtcttatcaagaagatgg |
267 |
Q |
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| T |
30551117 |
agatatgattagcacattacatgaaagcattcttagtcagatcctgtctttcattccgatcgtagacgcggttagcactagcgtcttatcaagaagatgg |
30551216 |
T |
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| Q |
268 |
gttgatgtttggaaatgcataaccaatctagattttgatgatagtttgcttggttctagaaagaaaaggatgcaaaaggaacagtttgtgaattttgttg |
367 |
Q |
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| T |
30551217 |
gttgatgtttggaaatgcataaccaatctagattttgatgatagtttgcttggttctagaaagaaaaggatgcaaaaggaacagtttgtgaattttgttg |
30551316 |
T |
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| Q |
368 |
aaaaagtgcttattcatctcact |
390 |
Q |
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| T |
30551317 |
aaaaagtgcttattcatttcact |
30551339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 146 - 383
Target Start/End: Original strand, 30559802 - 30560038
Alignment:
| Q |
146 |
gggaaacaacagaaggagaaagagatttgattagcacgttacatgaaagcattcttagtcagatcctgtctttcattccaatcgtagacgcggttagcac |
245 |
Q |
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| T |
30559802 |
gggaaacatcagtaggagaaagagaat-gattagcactttacatgaaagcattcttggtcacatcctatctttcattccaattgtagacacggttagcac |
30559900 |
T |
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| Q |
246 |
tagcgtcttatcaagaagatgggttgatgtttggaaatgcataaccaatctagattttgatgatagtttgcttggttctagaaagaaaaggatgcaaaag |
345 |
Q |
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| T |
30559901 |
tagcgtcttatcaagatgatggattgaagattcgacatccataaccagactaaagtttgatgatagtttgtttggttctatgaagaaaaaaatgaaaaag |
30560000 |
T |
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| Q |
346 |
gaacagtttgtgaattttgttgaaaaagtgcttattca |
383 |
Q |
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| T |
30560001 |
gaacagtttgtgaattttgttgaaaaagtgcttattca |
30560038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 30559691 - 30559757
Alignment:
| Q |
72 |
tacaacatagttgttgaacactgtcatttattatgtgtaccaggtgcttttgtaggtagtcatggattc |
140 |
Q |
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| T |
30559691 |
tacaacagagtagctgaacactgtcatttatt--gtgaatcaggtgcttttgtaagtagtcatggattc |
30559757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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