View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_92 (Length: 404)
Name: NF1199_low_92
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_92 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 77 - 375
Target Start/End: Complemental strand, 1180926 - 1180628
Alignment:
| Q |
77 |
ccacagaccacgagtataactcttttaaatttctacacctatcaaaatcaatcttagatggtgcaccgtaattcttggtattgtaacaaaaattctcaag |
176 |
Q |
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| T |
1180926 |
ccacagaccacaagtataactcttttaaatttctacacctatcaaaatcaatcttagatggtgcaccgtaattcttggtattgtaacaaaaattctcaag |
1180827 |
T |
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| Q |
177 |
acttgaagcatcaatagaaacttcttgtattgctgaaacatcaacattcttgagattttgtagtccactaatgctcacatactccatataccttgtgcca |
276 |
Q |
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| T |
1180826 |
acttgaagcatcaatagaaacatcttgtattgctgaaacatcaacactcttgagattttgtagaccactaatgctcacatactccatataccttgtgcca |
1180727 |
T |
|
| Q |
277 |
ccaccagaacttaacacctcacataaatccaaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatctccaaaaagt |
375 |
Q |
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| T |
1180726 |
ccaccagaacttaacacctcacataaatccaaagttatatattcaatcaaaggacaaaaagagatgagttggttaattgcatgttcatctccaaaaagt |
1180628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 160 - 375
Target Start/End: Complemental strand, 1186211 - 1185993
Alignment:
| Q |
160 |
taacaaaaattctcaagacttgaagcatcaatagaaacttcttgtattgctgaaacatcaacattcttgagattttgtagtccactaatgctcacatact |
259 |
Q |
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| T |
1186211 |
taacataaattctcaagactcgaggcatcaatagaaacatattttattcctgaaacatcaacactcttgagcttttgtagaccactaattcttaaagact |
1186112 |
T |
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| Q |
260 |
ccata---taccttgtgccaccaccagaacttaacacctcacataaatccaaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgc |
356 |
Q |
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| T |
1186111 |
tcattggctcccttgtgccaccaccagaacttagcaccttacaggagtccaaagttatatattcaatcaaatgacaaaaagagatgaggtggttgattgc |
1186012 |
T |
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| Q |
357 |
atgttcatctccaaaaagt |
375 |
Q |
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| T |
1186011 |
atgttcatctaccaaaagt |
1185993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 367
Target Start/End: Complemental strand, 5203791 - 5203730
Alignment:
| Q |
306 |
caaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatctc |
367 |
Q |
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| T |
5203791 |
caaagttatatgttcaatcaaaggacaacaagaaatgagatgctcaattgcatgttcatctc |
5203730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 366
Target Start/End: Original strand, 8553025 - 8553085
Alignment:
| Q |
306 |
caaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatct |
366 |
Q |
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||||||||||| |||||| ||||||||| |||| ||||| || |||||||||||||||| |
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| T |
8553025 |
caaagttatatgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgttcatct |
8553085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 49610710 - 49610642
Alignment:
| Q |
306 |
caaagttatatattcaatcaaaggacaaaaagagatgagttggctaattgcatgttcatctccaaaaag |
374 |
Q |
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||||||||||| |||||||||||||||| |||| ||||| || ||||||||| |||| ||| ||||| |
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| T |
49610710 |
caaagttatatgttcaatcaaaggacaacaagaaatgagatgttcaattgcatgctcatttcccaaaag |
49610642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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