View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_93 (Length: 403)
Name: NF1199_low_93
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_93 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 34 - 374
Target Start/End: Original strand, 47565133 - 47565471
Alignment:
| Q |
34 |
cagctcctgcaaattttgcacctctaatatcttaggcttcgtaataggccacaaacccccacgttacaaaccaactctgccaagagtattcttgcactct |
133 |
Q |
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| T |
47565133 |
cagctcctgcaaattttgcacctctaatatcataggcttcgtaataggccacaaacccccacgttacaaaccaactctgccaagagtattcttgcactct |
47565232 |
T |
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| Q |
134 |
aagaaagagagaaaatataccaaattgagagaagaaaagagcgtgtgtgtgtaatttgtgttttattgattatgaattgagtagtttttatggtacgttt |
233 |
Q |
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| T |
47565233 |
aagaaagagagaaaatataccaaattgagagaagaaaagagagtgt--gtgtaatttgtgttttattgattatgaattgagtagtttttatggtacgttt |
47565330 |
T |
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| Q |
234 |
gcattagtattttacttgatctcttacttgaattacaagtaagcaaacaaattcacaacaaactagttagttactaactaactctacatctaactacttg |
333 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47565331 |
gcataagtattttacttgatctcttacttgaataacaagtaagcaaactaattcacaacaaactagttagttactaactaactctacttctaactacttg |
47565430 |
T |
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| Q |
334 |
gtagttgaattatacaacacatccaaccagaatatgccaac |
374 |
Q |
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| T |
47565431 |
gtagttgaattatacaacacatccaaccagaatatgccaac |
47565471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 252 - 347
Target Start/End: Complemental strand, 36527056 - 36526961
Alignment:
| Q |
252 |
atctcttacttgaattacaagtaagcaaacaaattcacaacaaactagttagttactaactaactctacatctaactacttggtagttgaattata |
347 |
Q |
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||||||||||||||| |||||||||| ||| || ||| ||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |
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| T |
36527056 |
atctcttacttgaataacaagtaagctaaccaactcataacaaactagttagttactaactaactctacctctaactactcgatagttgaattata |
36526961 |
T |
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