View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_97 (Length: 396)
Name: NF1199_low_97
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_97 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 30 - 386
Target Start/End: Complemental strand, 1842646 - 1842290
Alignment:
| Q |
30 |
tgatcttgtgtgaatattttagcactttgagttgaggagtcttctcttgctgagagtttttgtttcaaaatcaaaccaccattctgttcgaagaatttct |
129 |
Q |
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| T |
1842646 |
tgatcttgtgtgaatattttagtgctttcagttgaggagtcttctcttgttgagagtttttgttttaaaatcagaccaccattctgctcaaagaatttct |
1842547 |
T |
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| Q |
130 |
ctttcattttgatgaatttccttttatggtatattaagtacgagaatgtcccaaccaaaagaagaataagtgttgctcctactcctgcattaatttatat |
229 |
Q |
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| T |
1842546 |
ctttcattttgatgaatttccttttatggtatattaagtacgagaatgtcccaaccaaaagaagaataagcgttgctcctactcctgcattaatttatat |
1842447 |
T |
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| Q |
230 |
caatagcatagtaaatgaacatgctaatgcaagaattatnnnnnnnnnnnnnnnnnnnntgaatttaaacaaaatcaatagggcatgcttagttgcttac |
329 |
Q |
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| T |
1842446 |
caatagcatagtaaatgaacatgctaatgtaagaattataaaaaaagtgaggaaaaaaatgaatttaaacaaaatcaatagggcatgcttagttgcttac |
1842347 |
T |
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| Q |
330 |
caataacagtgagtggtaatattagagttgcttttgtctggcaccctctttcctttg |
386 |
Q |
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| T |
1842346 |
caataacagtgagtggtaatattggagttgcttttgtctggcaccctctttcctttg |
1842290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 63 - 218
Target Start/End: Complemental strand, 1868198 - 1868043
Alignment:
| Q |
63 |
gaggagtcttctcttgctgagagtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatgaatttccttttatggtata |
162 |
Q |
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| T |
1868198 |
gaggagtcttctcttgttgagagtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatgaatttcctcttatggtaca |
1868099 |
T |
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| Q |
163 |
ttaagtacgagaatgtcccaaccaaaagaagaataagtgttgctcctactcctgca |
218 |
Q |
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| T |
1868098 |
ttaagtacgagaatgttcccaaaaagagaagaataaatgttattcctactcctgca |
1868043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 1868255 - 1868207
Alignment:
| Q |
30 |
tgatcttgtgtgaatattttagcactttgagttgaggagtcttctcttg |
78 |
Q |
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| T |
1868255 |
tgatcttgtgtgaatattttagcactttgagttgaggagtcttgtcttg |
1868207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 9118208 - 9118107
Alignment:
| Q |
68 |
gtcttctcttgctgagagtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatgaatttccttttatggtatattaag |
167 |
Q |
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| T |
9118208 |
gtcttctcttgtaaagagtttttgtagcaaaatgaaaccaccattttgttgaaagaatttttgttttagtttgatgagttttcttttttggtatatcaag |
9118109 |
T |
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| Q |
168 |
ta |
169 |
Q |
| |
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|| |
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| T |
9118108 |
ta |
9118107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 1816435 - 1816518
Alignment:
| Q |
84 |
agtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatgaatttccttttatggtatattaag |
167 |
Q |
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| T |
1816435 |
agtttttgttccaaaatagaacctccattctgcctaaagaacttctctttcaatttgataaatttccttctttggtatattaag |
1816518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 37567588 - 37567453
Alignment:
| Q |
84 |
agtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatgaatttccttttatggtatattaagtacgagaatgtcccaa |
183 |
Q |
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||||| ||||||||||| |||| |||||||| |||||||||||||||| ||||| | ||||||||| |||||||||||||| || | | ||| | |
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| T |
37567588 |
agtttctgtttcaaaatagaacctccattctgcctaaagaatttctctttcaatttgacaagtttccttttttggtatattaagtaggatattatccaca |
37567489 |
T |
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| Q |
184 |
ccaaaagaagaataagtgttgctcctactcctgcat |
219 |
Q |
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| T |
37567488 |
caaatagaacaataaatactgctcctactcctgcat |
37567453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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