View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_98 (Length: 396)

Name: NF1199_low_98
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_98
NF1199_low_98
[»] chr2 (21 HSPs)
chr2 (30-392)||(39216239-39216601)
chr2 (32-381)||(39370706-39371050)
chr2 (144-384)||(39223411-39223650)
chr2 (144-384)||(39196756-39196994)
chr2 (144-308)||(39380798-39380962)
chr2 (144-394)||(39387730-39387982)
chr2 (144-384)||(39205988-39206227)
chr2 (196-394)||(39396888-39397086)
chr2 (31-94)||(39380963-39381026)
chr2 (189-274)||(39473102-39473187)
chr2 (31-88)||(39388519-39388575)
chr2 (33-121)||(39468929-39469017)
chr2 (328-394)||(44615286-44615352)
chr2 (31-68)||(39162449-39162486)
chr2 (144-349)||(39162967-39163171)
chr2 (31-68)||(39206708-39206745)
chr2 (143-274)||(39138365-39138496)
chr2 (341-384)||(39144489-39144532)
chr2 (341-384)||(39493685-39493728)
chr2 (341-381)||(39604209-39604249)
chr2 (328-384)||(44624659-44624715)
[»] chr5 (1 HSPs)
chr5 (147-384)||(33561989-33562225)
[»] chr6 (2 HSPs)
chr6 (211-384)||(16114130-16114303)
chr6 (33-121)||(16113989-16114077)


Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 30 - 392
Target Start/End: Original strand, 39216239 - 39216601
Alignment:
Q  30 gtgttgacattgattgtaactgttagtataatgctttcttctgtcacccatatatttcaatctaggagatgtcttacattcatgcatagtatttgttttt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39216239 gtgttgacattgattgtaactgttagtataatgctttcttctgtcacccatatatttcaatctaggagatgtcttacattcatgcatagtatttgttttt 39216338  T
Q  130 tgtaaattcctatctattgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatg 229  Q
    | ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39216339 tctaaattcctatctattgtcattatcatttaccgacgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatg 39216438  T
Q  230 gattatcaattaagtcacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgcgtcactttacaatgatattttagcta 329  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39216439 gattatcaattaagtcacaccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgtgtcactttacaatgatattttagcta 39216538  T
Q  330 atttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccctactattc 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39216539 atttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccctactattc 39216601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 32 - 381
Target Start/End: Original strand, 39370706 - 39371050
Alignment:
Q  32 gttgacattgattgtaactgttagtataatgctttcttctgtcacccatatatttcaatctaggagatgtcttacattcatgcatagtatttgttttttg 131  Q
    ||||||||||||||||||||||| ||||||||||||| ||  | ||||||||||||| ||| ||||||||||| ||||| |||||||||| || | |||     
T  39370706 gttgacattgattgtaactgttattataatgctttct-ctagcgcccatatatttcagtcttggagatgtcttgcattcttgcatagtatatgatgtttt 39370804  T
Q  132 t--aaattcctatctattgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatg 229  Q
    |  ||||||||||      ||| ||||||||||  ||||||||||||||  |||  || |||| |||||  ||||||||| ||||||||| ||||  |||    
T  39370805 ttaaaattcctat------tcactatcatttaccaatgcttctataaatgtgaggcagcttaattatctattatctaaatatgcagttgcgtcttatatg 39370898  T
Q  230 gattatcaattaagtcacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgcgtcactttacaatgatattttagcta 329  Q
    ||| ||||||||||||    |  ||| | |||||||||||||||| ||| || | |||||||||||| | ||| ||||||| | | || |||||||| |     
T  39370899 gatgatcaattaagtcgtaactttggtggaacaagtttgcagttgcacataagtgagaaaactgatggacttgagtcacttcatactggtattttagttg 39370998  T
Q  330 atttgctagactcatcagatccatcaagacttgttttggatatgatacagaa 381  Q
    || ||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  39370999 atctgctagaatcatcagatccatcaagatttgttttggatatgatacagaa 39371050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 144 - 384
Target Start/End: Original strand, 39223411 - 39223650
Alignment:
Q  144 tattgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaag 243  Q
    |||||||| ||||||||||||||| ||||||||||| ||  ||| |||||||||| |||||||||| ||||||||||||||  ||| || |||||| |||    
T  39223411 tattgtcactatcatttactgatgtttctataaatatgaa-gagcttaaatatctactatctaaatatgcagttgcatcttacatgtatgatcaatcaag 39223509  T
Q  244 tcacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgcgtcactttacaatgatattttagctaatttgctagactca 343  Q
    ||| |||  ||| | || |||||||||||||| |||||   |||||||||||| ||||| |||||||| ||||| | |||||| |||| ||| ||| |||    
T  39223510 tcatgcctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagttgagtcacttttcaatggtgttttagttaatctgcaagaatca 39223609  T
Q  344 tcagatccatcaagacttgttttggatatgatacagaaccc 384  Q
    ||||||||||||| |||||||||||| ||||||| ||||||    
T  39223610 tcagatccatcaaaacttgttttggaaatgatactgaaccc 39223650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 144 - 384
Target Start/End: Complemental strand, 39196994 - 39196756
Alignment:
Q  144 tattgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaag 243  Q
    |||||| ||||||||||| ||||||||||||||||| | | ||| ||||||||||||||||||||| |||||||| |||||  |||||  |||||| |||    
T  39196994 tattgttattatcattta-tgatgcttctataaatatg-gagagcttaaatatctgctatctaaatatgcagttgaatcttacatggacgatcaatcaag 39196897  T
Q  244 tcacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgcgtcactttacaatgatattttagctaatttgctagactca 343  Q
     |  |||  ||| | || |||||||||||||||||||| | |||||||||||| ||||| |||||||| |||   |||||||| |||| ||| ||| |||    
T  39196896 ccgtgcctttggtggaagaagtttgcagttggacacaagtgagaaaactgatggagttgagtcacttttcaacagtattttagttaatctgcaagaatca 39196797  T
Q  344 tcagatccatcaagacttgttttggatatgatacagaaccc 384  Q
    ||||||||||||| |||||||||||| ||||||| ||||||    
T  39196796 tcagatccatcaaaacttgttttggaaatgatactgaaccc 39196756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 144 - 308
Target Start/End: Complemental strand, 39380962 - 39380798
Alignment:
Q  144 tattgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaag 243  Q
    |||||||| ||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||  |||||| ||| ||||||    
T  39380962 tattgtcactatcatttactgacgcttctataaatatgagggagcttaaatatctgctatctaaatatgcagttgcatcttacatggatgatcgattaag 39380863  T
Q  244 tcacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgcgtcac 308  Q
    |||  ||| ||| | |||||||||||||||||| |||| | ||||||||| || ||||| |||||    
T  39380862 tcataccattgggggaacaagtttgcagttggatacaagtgagaaaactgttgcagttgagtcac 39380798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 144 - 394
Target Start/End: Complemental strand, 39387982 - 39387730
Alignment:
Q  144 tattgtcattatcatttactgatgcttctataaataggagtgaggttaaatat---ctgctatctaaatttgcagttgcatctttaatggattatcaatt 240  Q
    |||||||| |||||||||||||||||||| |||||| ||  ||| |||| |||   ||||| ||||||| |||||||| |||||  |||||| |||||||    
T  39387982 tattgtcactatcatttactgatgcttctgtaaatatgaa-gagcttaattattatctgctttctaaatatgcagttgaatcttacatggatgatcaatt 39387884  T
Q  241 aagtcacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgcgtcactttacaatgatattttagctaatttgctagac 340  Q
    |||||   ||| ||| | ||||||||||||||||||||||| | |||||||||  | |||||  |||||||||||    ||||||| || | ||| |||     
T  39387883 aagtcgtaccattggtggaacaagtttgcagttggacacaagtgagaaaactggcggagttgaatcactttacaaaagaattttagttagtatgcgagaa 39387784  T
Q  341 tcatcagatccatcaagacttgttttggatatgatacagaaccctactattcca 394  Q
    ||||| || ||||||| |||||||||||||||||||  |||||||  |||||||    
T  39387783 tcatcggacccatcaaaacttgttttggatatgatattgaaccctgttattcca 39387730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 384
Target Start/End: Complemental strand, 39206227 - 39205988
Alignment:
Q  144 tattgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaag 243  Q
    |||||||| ||||||||||||||| ||| ||||||  ||   || |||||||||| || || |||| ||||||||||||||  ||| || ||||||  ||    
T  39206227 tattgtcactatcatttactgatgtttccataaatttgaaa-agcttaaatatctactttcaaaatatgcagttgcatcttacatgcatgatcaatctag 39206129  T
Q  244 tcacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgcgtcactttacaatgatattttagctaatttgctagactca 343  Q
    ||  |||  ||| | ||||||| ||||||||| |||||   |||||||||| | ||||   || |||||||||| |||||||| |||| ||| ||| |||    
T  39206128 tcgtgcctttggtggaacaagtctgcagttgggcacaagcgagaaaactgacggagttcaatctctttacaatggtattttagttaatctgcaagaatca 39206029  T
Q  344 tcagatccatcaagacttgttttggatatgatacagaaccc 384  Q
     |||||||||||| |||||||||||| ||||||| ||||||    
T  39206028 gcagatccatcaaaacttgttttggaaatgatactgaaccc 39205988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 394
Target Start/End: Complemental strand, 39397086 - 39396888
Alignment:
Q  196 tctgctatctaaatttgcagttgcatctttaatggattatcaattaagtcacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgat 295  Q
    |||||||||||||  |||||||||||| |  |||||| | | ||||||||   ||| ||  | ||||||||||||||||||||  | | | ||||| |||    
T  39397086 tctgctatctaaacatgcagttgcatcctacatggatgaccgattaagtcctaccattgatggaacaagtttgcagttggacatgagtgataaaaccgat 39396987  T
Q  296 gaagttgcgtcactttacaatgatattttagctaatttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccctactattcca 394  Q
    | ||||| |||||||  |||||| ||||  | | || ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | |||||||    
T  39396986 ggagttgagtcacttcgcaatgacatttatgtttatctgctagaatcatcagatccatcaagacttgttttggatataatacaaaaccccattattcca 39396888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 39381026 - 39380963
Alignment:
Q  31 tgttgacattgattgtaactgttagtataatgctttcttctgtcacccatatatttcaatctag 94  Q
    ||||| |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  39381026 tgttggcattgattgtaactgttactataatgctttctttcgtcacccatatatttcaatctag 39380963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 39473187 - 39473102
Alignment:
Q  189 ttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagtcacgccactggcgaaacaagtttgcagttg 274  Q
    ||||||||||||||||||||| ||||| | ||||||  |||||| ||||||||||||   ||||||  ||||||||||||||||||    
T  39473187 ttaaatatctgctatctaaatatgcagctacatcttacatggatgatcaattaagtccaaccactgatgaaacaagtttgcagttg 39473102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 39388575 - 39388519
Alignment:
Q  31 tgttgacattgattgtaactgttagtataatgctttcttctgtcacccatatatttca 88  Q
    |||||| |||||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  39388575 tgttgaaattgattgtaactgttagtataatgctttc-tctctcatccatatatttca 39388519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 39468929 - 39469017
Alignment:
Q  33 ttgacattgattgtaactgttagtataatgctttcttctgtcacccatatatttcaatctaggagatgtcttacattcatgcatagtat 121  Q
    |||||||||||||||||| |||||| ||| ||||  ||||||||||||  |||||||||||||| | ||  ||||||| | ||||||||    
T  39468929 ttgacattgattgtaactattagtacaattcttttctctgtcacccatgcatttcaatctaggaaaagttgtacattctttcatagtat 39469017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 44615286 - 44615352
Alignment:
Q  328 taatttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccctactattcca 394  Q
    |||||||| ||| |||||||||||| ||| ||||||||||||||| ||||  |||||||| ||||||    
T  44615286 taatttgcgagaatcatcagatccagcaaaacttgttttggatataatactaaaccctacgattcca 44615352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 39162449 - 39162486
Alignment:
Q  31 tgttgacattgattgtaactgttagtataatgctttct 68  Q
    |||||||||||||||||||||||||||| |||||||||    
T  39162449 tgttgacattgattgtaactgttagtattatgctttct 39162486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 349
Target Start/End: Original strand, 39162967 - 39163171
Alignment:
Q  144 tattgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaag 243  Q
    |||||||| ||||||||||||||| ||| ||||||  ||   || |||||||||| || || |||| ||||||||||||||  ||| || ||||||  ||    
T  39162967 tattgtcactatcatttactgatgtttccataaatttgaaa-agcttaaatatctactttcaaaatatgcagttgcatcttacatgcatgatcaatctag 39163065  T
Q  244 tcacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgcgtcactttacaatgatattttagctaatttgctagactca 343  Q
    ||  |||  ||| | ||||||| ||||||||| |||||   |||||||||| | ||||   || |||||||||| |||||||| |||| ||| ||| |||    
T  39163066 tcgtgcctttggtggaacaagtctgcagttgggcacaagcgagaaaactgacggagttcaatctctttacaatggtattttagttaatctgcaagaatca 39163165  T
Q  344 tcagat 349  Q
     |||||    
T  39163166 gcagat 39163171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 39206745 - 39206708
Alignment:
Q  31 tgttgacattgattgtaactgttagtataatgctttct 68  Q
    |||||||||||||||||||||||||||| |||||||||    
T  39206745 tgttgacattgattgtaactgttagtattatgctttct 39206708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 39138365 - 39138496
Alignment:
Q  143 ctattgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaa 242  Q
    ||||||||||  |||||| ||| |||||||| ||||| ||| ||  |||| | ||||||||| |||| |||||||||||||   | |||| |||||||||    
T  39138365 ctattgtcatcttcatttgctgttgcttctaaaaatatgagggatcttaattctctgctatccaaatatgcagttgcatctaacacggatgatcaattaa 39138464  T
Q  243 gtcacgccactggcgaaacaagtttgcagttg 274  Q
    |||   ||| ||  | ||||||||||||||||    
T  39138465 gtccaaccattgatggaacaagtttgcagttg 39138496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 384
Target Start/End: Original strand, 39144489 - 39144532
Alignment:
Q  341 tcatcagatccatcaagacttgttttggatatgatacagaaccc 384  Q
    |||||||||||||||| | ||||||||||||| |||||||||||    
T  39144489 tcatcagatccatcaaaagttgttttggatataatacagaaccc 39144532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 39493728 - 39493685
Alignment:
Q  341 tcatcagatccatcaagacttgttttggatatgatacagaaccc 384  Q
    |||||||||||||||| | ||||||||||||| |||||||||||    
T  39493728 tcatcagatccatcaaaagttgttttggatataatacagaaccc 39493685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 39604209 - 39604249
Alignment:
Q  341 tcatcagatccatcaagacttgttttggatatgatacagaa 381  Q
    |||||||||||||||| | ||||||||||||| ||||||||    
T  39604209 tcatcagatccatcaaaagttgttttggatataatacagaa 39604249  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 44624659 - 44624715
Alignment:
Q  328 taatttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccc 384  Q
    |||||||| ||| |||||||||||| ||| | ||||||||||||| |||| ||||||    
T  44624659 taatttgcgagaatcatcagatccagcaaaaattgttttggatataatactgaaccc 44624715  T

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Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 147 - 384
Target Start/End: Original strand, 33561989 - 33562225
Alignment:
Q  147 tgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagtca 246  Q
    ||||| ||||||||||||||| ||||||||||| ||  ||| |||||||||| |||||||||| ||||||||||||||  ||||||  ||||| |||||     
T  33561989 tgtcactatcatttactgatgtttctataaatatgaa-gagcttaaatatctactatctaaatatgcagttgcatcttacatggatggtcaatcaagtcg 33562087  T
Q  247 cgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgcgtcactttacaatgatattttagctaatttgctagactcatca 346  Q
     |||  |||    |||||||||||||||||||||| | |||||||||||| ||||| |||||||||||||| ||||||||||||| ||| ||| ||||||    
T  33562088 tgcctttggtagtacaagtttgcagttggacacaagtgagaaaactgatggagttgagtcactttacaatggtattttagctaatctgcaagaatcatca 33562187  T
Q  347 gatccatcaagacttgttttggatatgatacagaaccc 384  Q
    |||||||||| |||||||||||| ||||||| ||||||    
T  33562188 gatccatcaaaacttgttttggaaatgatactgaaccc 33562225  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 211 - 384
Target Start/End: Original strand, 16114130 - 16114303
Alignment:
Q  211 tgcagttgcatctttaatggattatcaattaagtcacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgcgtcactt 310  Q
    ||||||||||||||  |||||| |||| ||||||||  | | |||   |||||||||||||||| ||||||   ||||||||||||| |||| |||||||    
T  16114130 tgcagttgcatcttacatggatgatcagttaagtcatacaattggtagaacaagtttgcagttgtacacaagcgagaaaactgatgacgttgagtcactt 16114229  T
Q  311 tacaatgatattttagctaatttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccc 384  Q
    | ||| || ||||| | | || ||| ||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  16114230 tgcaaagacatttttgtttatctgcaagaatcagcagatccatcaagacttgttttggatataatacagaaccc 16114303  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 16113989 - 16114077
Alignment:
Q  33 ttgacattgattgtaactgttagtataatgctttcttctgtcacccatatatttcaatctaggagatgtcttacattcatgcatagtat 121  Q
    ||||||||||||||||||||||||||||| ||||| | ||||| ||||| ||||||||||  || | || |||||||| | ||||||||    
T  16113989 ttgacattgattgtaactgttagtataattctttcctatgtcagccataaatttcaatctcagaaaggttttacattctttcatagtat 16114077  T

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