View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_99 (Length: 394)
Name: NF1199_low_99
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_99 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 96 - 381
Target Start/End: Original strand, 38465746 - 38466028
Alignment:
| Q |
96 |
cacaaacttcatgttccatattctgttctatcgttttgtttggataatagaatatttatttattcttttatttaacaaatagaattatcctttttgtggg |
195 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38465746 |
cacaaacttcatgttccatattctgttctatcattttgtttggataatagaatatttatttattcttttatttaacaaatagaattatcctttttgtggg |
38465845 |
T |
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| Q |
196 |
ttgctgcggttctaatactatactattcagaactagcaacaagcaataatatagtgcattatataaatattgtgtaaaatctaaaaattatatgcaaaag |
295 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38465846 |
ttgc---ggttctaatactatactattcagaactagcaacaagcaataatatagtgcattatataaatattgtgtaaaatctaaaaattatatgcaaaag |
38465942 |
T |
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| Q |
296 |
atattataattgtttgtatgtactgagtatctctgcacacaactgcagagactagtctctcgagtcaagattcaaactcatgacct |
381 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38465943 |
atattataattttttgtatgaactgagtatctctgcacacaactgcagagactagtctctcgagtcgagattcaaactcatgacct |
38466028 |
T |
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