View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12000_high_3 (Length: 481)
Name: NF12000_high_3
Description: NF12000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12000_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 21 - 461
Target Start/End: Original strand, 29752502 - 29752946
Alignment:
| Q |
21 |
tttcaaaggatatccttgaagttattggccaatgttgccctcttttgaagtcactaaacctggagaggttgtctgtcgatggcatgcctgctgtgtactc |
120 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29752502 |
tttctaaggatatccttgaagttattggccaatgttgccctcttttgaagtcactaaacctggagaggttgtctgtcgatggcatgcctactgtgtactc |
29752601 |
T |
|
| Q |
121 |
ttattacaagggtgatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattttggctttactatgatgaattgctc |
220 |
Q |
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| T |
29752602 |
ttattgcaagggtgatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattatggcttaactatgatgaattgctt |
29752701 |
T |
|
| Q |
221 |
gctattcttgacggttgcccgcttctcgaatctcttgatctgcgaggttgcatttattattattccaatccaagtttacttaaaaggtgcagtgagcaaa |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | ||||||||||||||||||||||||||||| |
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| T |
29752702 |
gctattcttgacggttgcccgcttctcgaatctcttgatctgcgattttgcatttattattcttccaaccaaagtttacttaaaaggtgcagtgagcaaa |
29752801 |
T |
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| Q |
321 |
ttaaagattttcaccatccacttatctattagatggcaattaattgctaccatgatgatg-tccatctcattgtaacagatctgcagatgcatatgta-- |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || || ||| ||||||||| |||||||| |
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| T |
29752802 |
ttaaagattttcaccatccacttatctattagatggcaattaattgctaccatgatgatgatttagctaatatggacacttctgcagatacatatgtaat |
29752901 |
T |
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| Q |
418 |
-atgattgggagtattagacaattgactctgattgttgatgatgt |
461 |
Q |
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| T |
29752902 |
gatgattgggagtattagacaattgactctgattgttgacgatgt |
29752946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 330
Target Start/End: Complemental strand, 29729925 - 29729793
Alignment:
| Q |
204 |
actatgatgaattgctcgctattcttgacggttgcccgcttctcgaatctcttgatctgcgaggttgcatttattattatt------ccaatccaagttt |
297 |
Q |
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|||||| || |||||| |||||||||||| | ||||| ||||| |||||||||||||||| | ||| || |||||||||| ||||||||||||| |
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| T |
29729925 |
actatgttggattgcttgctattcttgaccgctgccctcttcttgaatctcttgatctgcaaagttccaggtattattattccaaatccaatccaagttt |
29729826 |
T |
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| Q |
298 |
acttaaaaggtgcagtgagcaaattaaagattt |
330 |
Q |
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||||||| ||||| | ||||||||||||||||| |
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| T |
29729825 |
acttaaatggtgctgcgagcaaattaaagattt |
29729793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 29730251 - 29730183
Alignment:
| Q |
26 |
aaggatatccttgaagttattggccaatgttgccctcttttgaagtcactaaacctggagaggttgtct |
94 |
Q |
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| T |
29730251 |
aaggatttccttgaacttattggtcgatgttgccctcttttgaagtcactaaatcttgagaggttgtct |
29730183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 29713313 - 29713449
Alignment:
| Q |
133 |
tgatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattttggctttactatgatgaattgctcgctattcttgac |
232 |
Q |
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|||| |||||||| |||||||||||||||| ||||||| ||||||| |||||| |||||||| | ||| || || |||| | ||||||||||| |
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| T |
29713313 |
tgataaagcatttgttattgcaaaaacaatgtctgggttatgccatcttaaattgaatggattttttagtaactgtggtggattggttgctattcttgat |
29713412 |
T |
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| Q |
233 |
ggttgcccgcttctcgaatctcttgatctgcgaggtt |
269 |
Q |
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|| ||||| ||||| ||||||||| |||| ||||||| |
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| T |
29713413 |
ggctgccctcttcttgaatctcttaatctacgaggtt |
29713449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 29713205 - 29713249
Alignment:
| Q |
34 |
ccttgaagttattggccaatgttgccctcttttgaagtcactaaa |
78 |
Q |
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||||||||||||||| | | ||||||||||||||||||||||||| |
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| T |
29713205 |
ccttgaagttattggtcgaagttgccctcttttgaagtcactaaa |
29713249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 263
Target Start/End: Complemental strand, 29730142 - 29730029
Alignment:
| Q |
150 |
ttgcaaaaacaatgagtgggttacgccatctaaaattgcttggattttggctttactatgatgaattgctcgctattcttgacggttgcccgcttctcga |
249 |
Q |
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|||| |||||||||| ||||||||||||||| ||| || |||| ||| || |||||| || ||| || |||||||||||||| |||| | ||| || |
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| T |
29730142 |
ttgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctgccatcatcttga |
29730043 |
T |
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| Q |
250 |
atctcttgatctgc |
263 |
Q |
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|||| ||||||||| |
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| T |
29730042 |
atcttttgatctgc |
29730029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 270
Target Start/End: Complemental strand, 41100314 - 41100156
Alignment:
| Q |
112 |
tgtgtactcttattacaagggtgatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattttggctttactatgat |
211 |
Q |
| |
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||||||||||||| || ||| |||| |||||||| ||||||||||| |||| ||||||||||||||| ||||| |||||||| || | | |||| | |
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| T |
41100314 |
tgtgtactcttatgacgaggatgataaagcatttgttattgcaaaaataatgtctgggttacgccatcttgaattgaatggatttttgcgtaattatggt |
41100215 |
T |
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| Q |
212 |
gaattgctcgctattcttgacggttgcccgcttctcgaatctcttgatctgcgaggttg |
270 |
Q |
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|||||| ||| ||||||| || ||||| ||||| ||||||||| |||| |||||||| |
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| T |
41100214 |
agattgcttgctcttcttgatggctgccctcttcttgaatctcttaatctacgaggttg |
41100156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 42563704 - 42563664
Alignment:
| Q |
35 |
cttgaagttattggccaatgttgccctcttttgaagtcact |
75 |
Q |
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||||||| ||||| |||||||||||||||||||||||||| |
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| T |
42563704 |
cttgaagccattggacaatgttgccctcttttgaagtcact |
42563664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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