View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12000_high_5 (Length: 455)

Name: NF12000_high_5
Description: NF12000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12000_high_5
NF12000_high_5
[»] chr6 (1 HSPs)
chr6 (138-426)||(33756982-33757270)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 138 - 426
Target Start/End: Original strand, 33756982 - 33757270
Alignment:
Q  138 gccgtgaaagttagttatggcgacggagcaaccaccggtgacacttccggcatccgtagaaaatctaataaaccaaatatgcgtgaaacaatcacagcca 237  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33756982 gccgtgaaagtttgttatggcgacggagcaaccaccggtgacacttccggcatccgtagaaaatctaataaaccaaatatgcgtgaaacaatcacaacca 33757081  T
Q  238 ccactcgatccttcaacgatacgactcctcgcaacgatggcagaaaatcaagctcttcaaattctcaatgttatttccaatacaccaattcgaaccactt 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33757082 ccactcgatccttcaacgatacgactcctcgcaacgatggcagaaaatcaagctcttcaaattctcaatgttatttccaatacaccaattcgaaccactt 33757181  T
Q  338 ttaatgctttcactctcttcatgattaataaacattcttctcaatcacaatcatcgtcaccgtcacagttatttccgttaccgtcacag 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||    
T  33757182 ttaatgctttcactctcttcatgattaataaacattcttctcaatcacaatcaccgtcacagtcacagtcatttccattaccgtcacag 33757270  T

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