View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12000_high_8 (Length: 374)

Name: NF12000_high_8
Description: NF12000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12000_high_8
NF12000_high_8
[»] chr1 (9 HSPs)
chr1 (1-356)||(8936175-8936530)
chr1 (1-356)||(8959714-8960051)
chr1 (1-360)||(8924552-8924893)
chr1 (194-353)||(9306840-9306999)
chr1 (200-360)||(9475290-9475450)
chr1 (194-357)||(9245056-9245219)
chr1 (194-360)||(9335503-9335669)
chr1 (211-360)||(8945879-8946028)
chr1 (200-357)||(9359247-9359404)
[»] chr3 (1 HSPs)
chr3 (194-357)||(9168398-9168558)
[»] chr6 (1 HSPs)
chr6 (200-359)||(15912782-15912941)


Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 8936175 - 8936530
Alignment:
Q  1 ctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgcattttcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8936175 ctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgttgtaggatatttaagaatttccaaagtaagagcttctgcattttcat 8936274  T
Q  101 atatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagtaatagtg 200  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||    
T  8936275 atatagtagtatcaactattcttctctggtaagtttgatatggatcaacagaatcgtagatataagagctgctgaaattataattgtataagtaatagtg 8936374  T
Q  201 aggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaac 300  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8936375 aggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaac 8936474  T
Q  301 aaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca 356  Q
    | ||||||  |||| ||||||||||||||||||||||||||||| |||||||||||    
T  8936475 agagttaacattgtgatgttgttttcgcaggataactcataccttggatcaccaca 8936530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 8959714 - 8960051
Alignment:
Q  1 ctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgcattttcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||  || || || ||    
T  8959714 ctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatg------------------ccaaagtaagagctggtgaatatttat 8959795  T
Q  101 atatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagtaatagtg 200  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  8959796 atctagtagtatcaactattctactctggtaagtttgatatggatcaacagaatcgtagatataagagctgctgaaattataattgtacaagtaatagtg 8959895  T
Q  201 aggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaac 300  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8959896 aggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaac 8959995  T
Q  301 aaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca 356  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  8959996 aaagttaaggttgtgatgttgttttcgcaggataactcgtacctcggatcaccaca 8960051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 8924552 - 8924893
Alignment:
Q  1 ctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgcattttcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||  || || || ||    
T  8924552 ctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatg------------------ccaaagtaagagctggtgaatatttat 8924633  T
Q  101 atatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagtaatagtg 200  Q
    || |||||||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |    
T  8924634 atctagtagtatcaactattctgctctggtatgtttgatatggatcaacagaatcgaagatataagagctgctgaaattataattgtataagtaatagcg 8924733  T
Q  201 aggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaac 300  Q
    ||||| || ||||||||||||||||| |||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  8924734 aggaaaggaggagcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatttactcgacaat 8924833  T
Q  301 aaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt 360  Q
    | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8924834 agagttaaagttgttatgttgttttcgcaggataactcgtacctcggatcaccacaggtt 8924893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 194 - 353
Target Start/End: Complemental strand, 9306999 - 9306840
Alignment:
Q  194 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 293  Q
    ||||| |||| |||| |||||||||||| |||||||||||  |||||||||  |  |||| ||||||  |||||||||||||||||||||||||||||||    
T  9306999 aatagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagtttctgtagttgattgatttcacatagtatttacc 9306900  T
Q  294 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcacc 353  Q
     || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  9306899 tgaaaacaaagttaacgttgtgatgttgttttcgcaggataactcatacctcggatcacc 9306840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 200 - 360
Target Start/End: Complemental strand, 9475450 - 9475290
Alignment:
Q  200 gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa 299  Q
    ||||||||| | |||||||| ||||||||||||| ||||||||||  |  ||||||||||||| |||||||||||| ||||||| ||| |||||||| |     
T  9475450 gaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgtagttgattgacttcacattgtagttacccgaaag 9475351  T
Q  300 caaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt 360  Q
    ||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||    
T  9475350 caaagttaacgttgtgatgttgtttacgcaggataactcgtacctcggatcaccacaggtt 9475290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 194 - 357
Target Start/End: Complemental strand, 9245219 - 9245056
Alignment:
Q  194 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 293  Q
    ||||| |||||| || |||||||  |||||||| |||||||||||||||||||  |||||||||||| |||||||||||||  ||||||||||| |||||    
T  9245219 aatagcgaggaagggaggagcaactaccctcttcaattccgggatcaactaacaaaattgtgtagttgttgtagttgattgccttcacatagtacttacc 9245120  T
Q  294 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacag 357  Q
    ||| |||| ||||||   ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  9245119 cgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccacag 9245056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 194 - 360
Target Start/End: Original strand, 9335503 - 9335669
Alignment:
Q  194 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 293  Q
    ||||| ||||||||| |||| ||||||| |||| |||||| ||||||||||||||||||||||||||  |||||||||||   | |||||||||||||||    
T  9335503 aatagcgaggaatggaggagtaatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatttcctgcacatagtatttacc 9335602  T
Q  294 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt 360  Q
     || |||| |||||| | ||| ||||||||||||||||||||||| ||| | |||||||||||||||    
T  9335603 tgaaaacagagttaacgctgtgatgttgttttcgcaggataactcgtactttggatcaccacaggtt 9335669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 211 - 360
Target Start/End: Original strand, 8945879 - 8946028
Alignment:
Q  211 gagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaacaaagttaaag 310  Q
    ||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || | ||   ||||      
T  8945879 gagcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgattgattttacatggtatttaccagaaagcagctttaaca 8945978  T
Q  311 ttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt 360  Q
    |||| ||||| ||||||||||||||||| |||||||||||||| ||||||    
T  8945979 ttgtgatgtttttttcgcaggataactcgtacctcggatcaccgcaggtt 8946028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 9359247 - 9359404
Alignment:
Q  200 gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa 299  Q
    ||||||||| |||||||| |||||||| |||| | |||||||||| |||||||||||| ||   ||||||||||   | ||||||||||||||| || ||    
T  9359247 gaggaatggaggagcaattaccctcttcaattactggatcaactagccgaattgtgtaatttacgtagttgatttcctgcacatagtatttacctgaaaa 9359346  T
Q  300 caaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacag 357  Q
    || ||||||    || ||||||||||||||||||||||| ||| ||||||||||||||    
T  9359347 cagagttaacacggtgatgttgttttcgcaggataactcgtacttcggatcaccacag 9359404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 194 - 357
Target Start/End: Original strand, 9168398 - 9168558
Alignment:
Q  194 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 293  Q
    ||||| |||||||||||   |||||||| ||||  ||||| ||||||||||  |  ||||||||||| ||||||||||||||||||||||||||||||||    
T  9168398 aatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttacc 9168494  T
Q  294 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacag 357  Q
    | | |||| | |||  ||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  9168495 ccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggatcaccacag 9168558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 200 - 359
Target Start/End: Complemental strand, 15912941 - 15912782
Alignment:
Q  200 gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa 299  Q
    ||||||||| |||||||||||||||||| |  |||| ||||||||||| |||||||||||| || |||||||||     ||||||||| ||||| || ||    
T  15912941 gaggaatggaggagcaatcaccctcttgcaacccggcatcaactaacctaattgtgtagtttttatagttgatttccaacacatagtacttacctgaaaa 15912842  T
Q  300 caaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggt 359  Q
    || | |||| ||||| ||||||||||||||||||||||| || |||||||| ||||||||    
T  15912841 cagatttaaggttgtgatgttgttttcgcaggataactcgtagctcggatccccacaggt 15912782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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