View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_high_1 (Length: 767)
Name: NF12001_high_1
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 164 - 750
Target Start/End: Original strand, 33352302 - 33352889
Alignment:
| Q |
164 |
gttccactcaccattgaatattcagtcacggagttggtcctttcactactgactattaatgtttgtgtgaatattgcagttgtcatggacgtttgagaaa |
263 |
Q |
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| T |
33352302 |
gttccactcaacattgaatatccagtcacggagttggtcctttcactactgactattaatgtttgtgtgaatattgcagttgtcgtggacgtttgagaaa |
33352401 |
T |
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| Q |
264 |
ggaggaatgacactgcattggagatggaaatgcatgaagtctcctgattgtaagaaaactactgcagaaatattggactttctcatggatgcaaacataa |
363 |
Q |
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| T |
33352402 |
ggaggaatgacactgcattggagatggaaatgcatgaagtctcctgattgtaagaaaactactgcagaaatattggactttctcatggatgcaaacataa |
33352501 |
T |
|
| Q |
364 |
ggcttagtgtaagataatactctgcttaacnnnnnnnn-agtgcattttccatacaggtaatttcaatcaacctctatgtttcgtgtttcttggtttatt |
462 |
Q |
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| T |
33352502 |
ggcttagtgtaagataatactctgcttaactttttttttagtgcattttccatacaggtaatttcaatcaacctctatgtttcgtgtttcttggtttatt |
33352601 |
T |
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| Q |
463 |
cactatggttattgtcttggagatgtcattctgggatgagaatagtaaataagaatgtaatgtttaatgatgtgaaatgggagtttaaatggacgaatta |
562 |
Q |
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| T |
33352602 |
cactaaggttattgtcttggagatgtcattatgggatgagaatagtaaataagaatgtaatgtttaatgatgtgaaatgggagtttaaatggacgaatta |
33352701 |
T |
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| Q |
563 |
tcaattctgttaatacttattttatgtgaaatggtttgataggtgaaatggtaaaatccggtatatcattgtttcattgccagtttgttgttgtattcaa |
662 |
Q |
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| T |
33352702 |
tcaattctgttaatacttattttatgtgaaatggtttgataggtgaaatgttaaaatcctgtatatcattgtttcattgccagtttgttgttgtattcaa |
33352801 |
T |
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| Q |
663 |
ttcatgcaattattgtattatgctttttgtgagaaatcattgtttagagaaagaacgataagcattcttgttagttgttactcatatc |
750 |
Q |
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| T |
33352802 |
ttcatgcaattattgtattatgctctttgtgagaaatcattgtttagagaaagaacgataagcattcttgttagttgttactcatatc |
33352889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 33352120 - 33352304
Alignment:
| Q |
14 |
cagagacagtgaaaaaactgatgttgcagttgtggacctttacttaaaacgttaccaatacttttgtttttactccgatagatattccattggaaaatat |
113 |
Q |
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| T |
33352120 |
cagagacagtgaaaaaactgatgttgcagtcgtggacctttacttaaaaccttaccaatacttttgtttttactccgatagatattgcattggaaaatat |
33352219 |
T |
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| Q |
114 |
caaatcaattgtacaataattttataatattccattttttatatcattatgttccactcaccattgaatattcagtcacggagtt |
198 |
Q |
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| T |
33352220 |
caaatcaattgtacaataattttataatattccattttaaatatcattctgttccactcaccattgaatatccagtcacggagtt |
33352304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 28761917 - 28761964
Alignment:
| Q |
326 |
tgcagaaatattggactttctcatggatgcaaacataaggcttagtgt |
373 |
Q |
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| T |
28761917 |
tgcagaaatattggaatttctcttggatacaaacataaggcttagtgt |
28761964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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