View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_high_10 (Length: 423)
Name: NF12001_high_10
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 2 - 408
Target Start/End: Complemental strand, 50967949 - 50967543
Alignment:
| Q |
2 |
tatcttacctcgataaaaataattaatgaaattaccatacaactaaatggacttgttttgattcttgaagttaatagcatgtagacaaattaaataacat |
101 |
Q |
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| T |
50967949 |
tatcttacctcgataaaaataattaatgaaattaccctacaactaa-tggatttgttttgattcttgaagttaatagcatgtagacaaattaaataacat |
50967851 |
T |
|
| Q |
102 |
ttattgtataacccaaattaaaataacatttttccaaatttcgggtatgtcatcgacataggtctaattgttcttttggggtattatttatctgagctgg |
201 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50967850 |
ttattgtataatccaaattaaaataacatttttccaaatttcgggtatgtcatcgacataggtctaattgttcttttggggtattatttatccgagctgg |
50967751 |
T |
|
| Q |
202 |
atataacttggattaccatgcataatcatgtaagctcttgatgagtttgttgtatgtaataa-aaaagtatgtgctacctctgtatatagagagtttaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50967750 |
atataacttggattaccatgcataatcatgtaagctcttgatgagtttgttgtatgtaataaaaaaagtatgtgctacctctgtatatagagagtttaca |
50967651 |
T |
|
| Q |
301 |
tcacccaaaagtttcttaccatataagcattgatatgctaattaaaaagtagaaaaaggaatagatttctattaatttccagcggaagcttcgtctgcgc |
400 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50967650 |
tcacccaaaagtttcttactatataagcattgatatgctaattaaaaagtagaaaaaggaatagatttctattaatttccagcggaagcttcgtctgcgc |
50967551 |
T |
|
| Q |
401 |
gtgacatt |
408 |
Q |
| |
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|||||||| |
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| T |
50967550 |
gtgacatt |
50967543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 2 - 408
Target Start/End: Complemental strand, 51071084 - 51070678
Alignment:
| Q |
2 |
tatcttacctcgataaaaataattaatgaaattaccatacaactaaatggacttgttttgattcttgaagttaatagcatgtagacaaattaaataacat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51071084 |
tatcttacctcgataaaaataattaatgaaattaccctacaactaa-tggatttgttttgattcttgaagttaatagcatgtagacaaattaaataacat |
51070986 |
T |
|
| Q |
102 |
ttattgtataacccaaattaaaataacatttttccaaatttcgggtatgtcatcgacataggtctaattgttcttttggggtattatttatctgagctgg |
201 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51070985 |
ttattgtataatccaaattaaaataacatttttccaaatttcgggtatgtcatcgacataggtctaattgttcttttggggtattatttatccgagctgg |
51070886 |
T |
|
| Q |
202 |
atataacttggattaccatgcataatcatgtaagctcttgatgagtttgttgtatgtaataa-aaaagtatgtgctacctctgtatatagagagtttaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51070885 |
atataacttggattaccatgcataatcatgtaagctcttgatgagtttgttgtatgtaataaaaaaagtatgtgctacctctgtatatagagagtttaca |
51070786 |
T |
|
| Q |
301 |
tcacccaaaagtttcttaccatataagcattgatatgctaattaaaaagtagaaaaaggaatagatttctattaatttccagcggaagcttcgtctgcgc |
400 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51070785 |
tcacccaaaagtttcttactatataagcattgatatgctaattaaaaagtagaaaaaggaatagatttctattaatttccagcggaagcttcgtctgcgc |
51070686 |
T |
|
| Q |
401 |
gtgacatt |
408 |
Q |
| |
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|||||||| |
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|
| T |
51070685 |
gtgacatt |
51070678 |
T |
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