View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_high_11 (Length: 413)
Name: NF12001_high_11
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 398
Target Start/End: Original strand, 41421120 - 41421501
Alignment:
| Q |
15 |
atgaagaaatttgtttaaaagaatatatgtcatggatttatgtaaaagtttgtagtttatccacggaattatgcaatatttacaaatatcatatttaacc |
114 |
Q |
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| T |
41421120 |
atgaagaaatttgtttaaaagaatatatatcatggatttatgtaaaagtttgtagtttatccacggagttatgcaatatttacaaatatcatatttaacc |
41421219 |
T |
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| Q |
115 |
aacgtgataaacatgaatatcataatatttttgtccatggataaccattgttagtcctaatatgggtttattaatatagtaatgaattttaacaaattaa |
214 |
Q |
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| T |
41421220 |
aacgtgataaacatgaatatcataatatttgtgtccatggataaccattgttagtcctaatatgggtttattaatctagtaatgaattttaacagattaa |
41421319 |
T |
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| Q |
215 |
aagtattgaattgatcgtgtcggaaagtatggatgtaacttccttcttcctcgataaaatccaagtaattaaaaagttatacactaccatatcgacatga |
314 |
Q |
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| T |
41421320 |
aagtattgaattgatcgtgtcggaaagtatggatgtaacttccttcttcctcgataaaatccaagtaattaaaaagttatacactaccatatcgacgtga |
41421419 |
T |
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| Q |
315 |
tgttatttctctaaacatagcagaagtatatattactcaatttcacttaaaccaaaccataatcacttcccactttatcaaaac |
398 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41421420 |
tgttatttctctaaacatagtagaa--atatattactcaatttcacttaaaccaaaccataatcacttcccactttatcaaaac |
41421501 |
T |
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