View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_high_15 (Length: 372)
Name: NF12001_high_15
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_15 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 16871 - 16548
Alignment:
| Q |
1 |
aaacaaatgcatacctataaagccaatacaaaattaaccaaatattatcaat---------gtagaaacaaaaaacctcagagtcctccatccaagtcag |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16871 |
aaacaaatgcatacctataaagccaatacaaaattaaccaaatattatcaatattatcaatgtagaaacaaaaaacctcagagtcctccatccaagtcag |
16772 |
T |
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| Q |
92 |
ttcatatataaattgtactcgaagagtgatgagaccctctttagctataattgcactattatgtagcaaaaattacacaacattaagcatgtaaagcatg |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16771 |
ttcatatataaattgtactcgaagagtgatgagaccctctttagctataattgcactattatgtagcaaaaattacacaacattaagcatgtaaagcatg |
16672 |
T |
|
| Q |
192 |
gtaaaaactagaaaattattgaatgcaaattggttataactcttggtggtattttggggaaactcttaacaatcctcggacaccacaattgtgaaacata |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
16671 |
gtaaaaactagaaaattattgaatgcaaattggttataactcttggtggtattttggggaaactcttaacaatcctcaaacatcacaattgtgaaacata |
16572 |
T |
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| Q |
292 |
aacaaagatgaacggaatgctgag |
315 |
Q |
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|||||||||||||||||||||||| |
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| T |
16571 |
aacaaagatgaacggaatgctgag |
16548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 1401487 - 1401810
Alignment:
| Q |
1 |
aaacaaatgcatacctataaagccaatacaaaattaaccaaata---------ttatcaatgtagaaacaaaaaacctcagagtcctccatccaagtcag |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1401487 |
aaacaaatgcatacctataaagccaatacaaaattaaccaaatattatcaatattatcaatgtagaaacaaaaaacctcagagtcctccatccaagtcag |
1401586 |
T |
|
| Q |
92 |
ttcatatataaattgtactcgaagagtgatgagaccctctttagctataattgcactattatgtagcaaaaattacacaacattaagcatgtaaagcatg |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1401587 |
ttcatatataaattgtactcgaagagtgatgagaccctctttagctataattgcactattatgtagcaaaaattacacaacattaagcatgtaaagcatg |
1401686 |
T |
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| Q |
192 |
gtaaaaactagaaaattattgaatgcaaattggttataactcttggtggtattttggggaaactcttaacaatcctcggacaccacaattgtgaaacata |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
1401687 |
gtaaaaactagaaaattattgaatgcaaattggttataactcttggtggtattttggggaaactcttaacaatcctcaaacatcacaattgtgaaacata |
1401786 |
T |
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| Q |
292 |
aacaaagatgaacggaatgctgag |
315 |
Q |
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|||||||||||||||||||||||| |
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| T |
1401787 |
aacaaagatgaacggaatgctgag |
1401810 |
T |
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