View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_high_18 (Length: 366)
Name: NF12001_high_18
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_18 |
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| [»] scaffold0229 (2 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 41 - 350
Target Start/End: Complemental strand, 16504 - 16195
Alignment:
| Q |
41 |
aatttttccattatcatattcagatgagaggcatgcttttcatcagacctggccattgttattttttgaggcaactatccaaggtagcactccataattt |
140 |
Q |
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| T |
16504 |
aatttttccattatcatattcagatgagaggcatgcttttcatcagacctaaccattgttattttttgaggcaactatccaaggcagcactccataattt |
16405 |
T |
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| Q |
141 |
tgaggcaattttgtataatctgagttcttaaagattgaaattattattggacacaaaatttggtatcaacatcatatttatatatgatttttgagcttta |
240 |
Q |
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| T |
16404 |
tgaggcaattttgtataatctgagttcttaaagattgaaattattattggacacaaaatttgatatcaacatcatatttatatatgatttttgagcttta |
16305 |
T |
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| Q |
241 |
tagtaatttttctctttcttcgattctgacatcacacacattcgaattgttgcccaatattttgtgtctaagtaagacattcttaaatatttttacatta |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16304 |
tagtaatttttctctttcttcgattctgacatcacacacattcgaattattgtccaatattttgtgtctaagtaagacattcttaaatatttttacatta |
16205 |
T |
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| Q |
341 |
ttgaagaaag |
350 |
Q |
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|||||||||| |
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| T |
16204 |
ttgaagaaag |
16195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 111 - 350
Target Start/End: Complemental strand, 17765 - 17524
Alignment:
| Q |
111 |
gcaactatccaaggtagcactccataattttgaggcaattttgtataatc--tgagttcttaaagatt-gaaattattattggacacaaaatttggtatc |
207 |
Q |
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| T |
17765 |
gcaactatccaaggcaggactccataattttgaggcaattttgtggaatcaatgagttcttaaagattggaaaatattatcgaacacaaagtttgatatc |
17666 |
T |
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| Q |
208 |
aacatcatatttatatatgatttttgagctttatagtaatttttctctttcttcgattctgacatcacacacattcgaattgttgcccaa-tattttgtg |
306 |
Q |
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| T |
17665 |
aacaccatgtgtatacacgatttctgagttttatgttgatttttctc--tcttcgattctgacaccacacgcatttgaattgttgtccaacttttttgtg |
17568 |
T |
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| Q |
307 |
tctaagtaagacattcttaaatatttttacattattgaagaaag |
350 |
Q |
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| T |
17567 |
tctatgtaacacattcttaaatatttttacatcgttgaagaaag |
17524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 41 - 350
Target Start/End: Original strand, 1401854 - 1402163
Alignment:
| Q |
41 |
aatttttccattatcatattcagatgagaggcatgcttttcatcagacctggccattgttattttttgaggcaactatccaaggtagcactccataattt |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1401854 |
aatttttccattatcatattcagatgagaggcatgcttttcatcagacctaaccattgttattttttgaggcaactatccaaggcagcactccataattt |
1401953 |
T |
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| Q |
141 |
tgaggcaattttgtataatctgagttcttaaagattgaaattattattggacacaaaatttggtatcaacatcatatttatatatgatttttgagcttta |
240 |
Q |
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| T |
1401954 |
tgaggcaattttgtataatctgagttcttaaagattgaaattattattggacacaaaatttgatatcaacatcatatttatatatgatttttgagcttta |
1402053 |
T |
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| Q |
241 |
tagtaatttttctctttcttcgattctgacatcacacacattcgaattgttgcccaatattttgtgtctaagtaagacattcttaaatatttttacatta |
340 |
Q |
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| T |
1402054 |
tagtaatttttctctttcttcgattctgacatcacacacattcgaattattgtccaatattttgtgtctaagtaagacattcttaaatatttttacatta |
1402153 |
T |
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| Q |
341 |
ttgaagaaag |
350 |
Q |
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|||||||||| |
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| T |
1402154 |
ttgaagaaag |
1402163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 111 - 350
Target Start/End: Original strand, 1400593 - 1400834
Alignment:
| Q |
111 |
gcaactatccaaggtagcactccataattttgaggcaattttgtataatc--tgagttcttaaagatt-gaaattattattggacacaaaatttggtatc |
207 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||||||||| |||| |||||||||||||||| |||| |||||| | ||||||| |||| |||| |
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| T |
1400593 |
gcaactatccaaggcaggactccataattttgaggcaattttgtggaatcaatgagttcttaaagattggaaaatattatcgaacacaaagtttgatatc |
1400692 |
T |
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| Q |
208 |
aacatcatatttatatatgatttttgagctttatagtaatttttctctttcttcgattctgacatcacacacattcgaattgttgcccaa-tattttgtg |
306 |
Q |
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| T |
1400693 |
aacaccatgtgtatacacgatttctgagttttatgttgatttttctc--tcttcgattctgacaccacacgcatttgaattgttgtccaacttttttgtg |
1400790 |
T |
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| Q |
307 |
tctaagtaagacattcttaaatatttttacattattgaagaaag |
350 |
Q |
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| T |
1400791 |
tctatgtaacacattcttaaatatttttacatcgttgaagaaag |
1400834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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