View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_high_19 (Length: 357)
Name: NF12001_high_19
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 28 - 222
Target Start/End: Original strand, 27215357 - 27215551
Alignment:
| Q |
28 |
gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatatacaaatacgaatgaatttattaagcgcatga |
127 |
Q |
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| T |
27215357 |
gttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaaccactgcatatacaaatacaaatgaatttagtaagcgcatga |
27215456 |
T |
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| Q |
128 |
agagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgca |
222 |
Q |
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| T |
27215457 |
agagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgca |
27215551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 28 - 222
Target Start/End: Original strand, 27221319 - 27221513
Alignment:
| Q |
28 |
gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatatacaaatacgaatgaatttattaagcgcatga |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
27221319 |
gttcctggccatacagtgtattcacacctatttgtgaaagtcaccttagctcctccaaccactgcatatacaaatacaaatgaatttaataagcgcatga |
27221418 |
T |
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| Q |
128 |
agagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgca |
222 |
Q |
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| T |
27221419 |
agagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccatagaagaggaatgca |
27221513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 27207986 - 27208053
Alignment:
| Q |
28 |
gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata |
95 |
Q |
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| T |
27207986 |
gttcctggccatacagtgtatgcacacctatttgtgaatgtcaccttagctcctccaaccactgcata |
27208053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 27443544 - 27443468
Alignment:
| Q |
28 |
gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatatacaaatac |
104 |
Q |
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| T |
27443544 |
gttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaacaactgcataaagaaatac |
27443468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 27433066 - 27433133
Alignment:
| Q |
28 |
gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata |
95 |
Q |
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| T |
27433066 |
gttcccggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccgctgcata |
27433133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 27443443 - 27443349
Alignment:
| Q |
106 |
aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaattgattaattatatggaa---aattaatgtagttatgtattgatatat |
197 |
Q |
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||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||| |||||||| ||||||||||||| ||| |||||||| |
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| T |
27443443 |
aatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatat |
27443349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 27410236 - 27410303
Alignment:
| Q |
28 |
gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata |
95 |
Q |
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| T |
27410236 |
gttcctggccatacagtatatccacatctattcgtgaatgtcaccttggctcctccaaccactgcata |
27410303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 27415821 - 27415756
Alignment:
| Q |
28 |
gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgca |
93 |
Q |
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||||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| ||||| |
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| T |
27415821 |
gttcctggccatacagtgtatacacatctattcgtgaatgtcaccttggctcctccaacctctgca |
27415756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 27208086 - 27208181
Alignment:
| Q |
106 |
aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaatt----gattaattatatggaaaattaatgtagttatgtattgatatat |
197 |
Q |
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| T |
27208086 |
aatgaatttattaaccacatgaagagaaataaactaagctaaatgaattaatggattaactatatggaaaattaatgtagttgagtactgatatat |
27208181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 27455314 - 27455409
Alignment:
| Q |
106 |
aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaattgattaatt----atatggaaaattaatgtagttatgtattgatatat |
197 |
Q |
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|||||||||||||| | ||||||||| ||| |||| |||||| |||||| ||| ||| ||||||||||||||||||||| |||||||||||| |
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| T |
27455314 |
aatgaatttattaaccacatgaagagcaataaactaagctaaatgaattaattgatttactatatggaaaattaatgtagttgggtattgatatat |
27455409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 27455223 - 27455277
Alignment:
| Q |
37 |
catacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactg |
91 |
Q |
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|||||| | ||||||||| |||| |||||||||||||||||||||||||| |||| |
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| T |
27455223 |
catacaatttattcacacttattggtgaatgtcaccttagctcctccaactactg |
27455277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 27433166 - 27433247
Alignment:
| Q |
106 |
aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaattgattaatta----tatggaaaattaatgtagtt |
183 |
Q |
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|||||||||||||| | ||||||||| ||| || | |||||| |||||| ||| |||| |||||||||||||||||||| |
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| T |
27433166 |
aatgaatttattaaccacatgaagaggaataaaataagctaaatgaattaatttattaactatatggaaaattaatgtagtt |
27433247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 2638265 - 2638208
Alignment:
| Q |
223 |
tttgcgccttgctttggtttaggaggtagccttgggtgttggttgaaccagatatggc |
280 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |
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| T |
2638265 |
tttgcgccttgctttgatttaggaggtagccttaagtgttggttgaaccagctatggc |
2638208 |
T |
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