View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_high_22 (Length: 348)
Name: NF12001_high_22
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 4644447 - 4644125
Alignment:
| Q |
11 |
caaaggcgcaaacaagccaaacatatgaacggaaaaaatgtatatcctgctttggtttcggataaaaggattacccctggcggatatggcttccaatgcc |
110 |
Q |
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| T |
4644447 |
caaaggcgcaaacaagccaaacatatgaacggaaaaaatgtatatcctgctttggtttcggataaaaagattacccctggcggatatggcttccaatgcc |
4644348 |
T |
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| Q |
111 |
aactttctgtaggctgccatagaggataacccggaggactccaaatcggtacaccagctgtttgacttccatgttggccccacatggaatatgcaggagc |
210 |
Q |
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| T |
4644347 |
aactttctgtaggctgccatagaggataacccggaggactccaaatcggtacaccagctgtttgacttccatgttggccccacatgggatatgcaggagc |
4644248 |
T |
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| Q |
211 |
tggaggaaaggtgtgattagaatgatatggtggataagccataatcggtctttgcatacaatagttcctttgcataggatctcttcgatttggccatttt |
310 |
Q |
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| T |
4644247 |
tggaggaaaggtgtgattagaatgatatggtggataagccataatcggtctttgcatacaatagttcctttgcataggatctcttcgatttggccatttt |
4644148 |
T |
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| Q |
311 |
cgatcttcgtccgtgtggatgat |
333 |
Q |
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| T |
4644147 |
cgatcttcgtccgtgtggatgat |
4644125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 318
Target Start/End: Original strand, 40801546 - 40801779
Alignment:
| Q |
91 |
cggatatggcttccaatgccaactttctgtaggctgccatagaggataacccggaggactccaaatcggtacaccagctgtttgacttccatgttggccc |
190 |
Q |
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| T |
40801546 |
cggaaatggtttccaatgccaactttctgtaggctgccacacgggataaccagaatggccccaaacctgcatgccagccgtttgagttccagattgtccc |
40801645 |
T |
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| Q |
191 |
cacatggaatatgcaggagct---ggaggaaaggtgtgattagaatgatatggtggataa---gccataatcggtctttgcatacaatagttcctttgca |
284 |
Q |
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||||||| |||| ||||||| ||||||| ||| || ||||||| ||||| |||| | | |||||| |||||||| | ||||||||||||||| |
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| T |
40801646 |
cacatgggatataaaggagctagaggaggaagggtatggttagaataatatgatggaggaccgggcataattggtctttgaagacaatagttcctttgag |
40801745 |
T |
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| Q |
285 |
taggatctcttcgatttggccattttcgatcttc |
318 |
Q |
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| T |
40801746 |
ttggatcccttggatttagccatttccgatcttc |
40801779 |
T |
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