View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_high_27 (Length: 267)
Name: NF12001_high_27
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 46900766 - 46901013
Alignment:
| Q |
1 |
tgtgttgggtcagacacaacctggcggagtagcctctgtcatgcaatccgccgctacacgaaatgagcaggctggaatcgtcggtcataaagacgtcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46900766 |
tgtgttgggtcagacacaacctggcggagtagcctctgtcatgcaatccgccgctacacgaaatgagcaggctggaatcgtcggtcataaagacgtcaca |
46900865 |
T |
|
| Q |
101 |
gatgtcaccggtgaccgtggcgtgaccgtcacggaaactcaagtccccggaagacgcatcataaccgaaacagtcggtggacaggttctgattctgaacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46900866 |
gatgtcaccggtgaccgtggcgtgaccgtcacggaaactcaagtccctggaagacgcatcataaccgaaacagtcggtggacaggttctgattctgaacc |
46900965 |
T |
|
| Q |
201 |
tcactatgtgttttgtttttattttaaaatttcacctcgtattctgct |
248 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46900966 |
tcactatgtattttgtttttattttaaaatttcacctcgtattctgct |
46901013 |
T |
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